Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1404 ATGAAATTACATTTGACGCTGCCAACAAAAATGGGTGGCGCCGCCCCACGCTTCCTCTTCCTCCTCTCCACACCGCTCCCTCTTCTCCGCCACAGCCACCGCCACCGCCACCACAAACTCCTCTTCCTCTCTTCCTCATCCCTTTCCCACCGCTACTTCTCTTCTTCTCCTTTCTCTTCCTCACCTCTCACACTCAAAATCAAAGCCTCTCAACAACAACACCAACACCTTCACACCCAATCTCACACCTCTCTCTTGCCCGAGTGGTCTCGATTCCTCTCTCACGTCTCCTCCGCCGGTTACCTCCCTTCGTTCTCCGACCACTCCTTCGCCGCCGAATTGCCCCAACCGTTCCTCCGCGACGCCACCGCCTGCTTGGCCTTCGCACGGGACCGACCTAACCTCCTAAGGTTGCTTTCGACGAGAGACATTGCTTTGGTGGTTGAGCATTGCTCTCCGTTTCTCTTCCGAGATGCCGAGGATTCCGTGAGGAAGATGAAGTCCTTTCTATCCAATTGCAACGCTAATGTGATAGACACTGATAGAGCAAATACTGTTGATCTAATGAAGTTTATGCTGAGTTATGCAAGTATCCCATTTGTCTCTTCAGAAAGGAACACGCTCTGTAACACAGATCTTGTGGAATCATCTGTCAGAAATCTATTTGCTGAACTTTTCAAGCTCAGTTATAGTGCACCTGGACCTAACTCTTTTGATTCAGTGCAAACTCAAACGACTGGTACATTTGGACAGGCAAAGCCTCCTGGTCAAAAAATTGAAATGAAAAGGGGTGATTGGATTTGCCCTAGGTGTAATTTCATGAATTTTGCAAGAAACGTCAAATGTCTTGAGTGTGAGGAAGCAAGGCCAAAAAGACAACTGGCTGGAGGTGAATGGGAATGTCCTCAGTGTGATTTCTATAACTACGGGAGAAATATGACCTGTTTAAGGTGTGATTGCAAGCGACCTGGACAAATATCTGTGGATGCCACCAATACCATGTCACATGTGGGGTACAAAAATGGAAACAATTCTGATGTTGATGCTAGGTTAGCTACTAATGAAGAGAAGGCACAGCGTTGGTTTAGCAAGGTTTCTCAACTAGACAGCAGTGCTGATATTAATAGTGTGATAGCAGATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGAGTGAATAGATTTGTTGTGAGCACAAGGAAAACTCCATTAGAGAGGAGGTTGGCTAATGCTCAATACAAGAAAAACTTGGCCAATAATGGCACTTCCGGCATTGAGGATTCTGAAGCCGGGGATTCAATTAACTCCCATGACACACTGGACGACATTCTAGGTCATTCAGCTGGCATTCCTCAATCTGACAATAAGAACATTGTTGCCGAACAAAAGGCTAGTGGAGACAGCCTGCCTTCATCTGCTAGCAATACTTCACTTTTTAAAGATGTGAGAGGGAGCAGCACTGGTACTGTTATTCCTGTTCCATTCAAAAAGGTGGTATTAGACACTGATGTTGGATATACTAGTTTGGGAGGCAGTACACAGCTTTCTAACAATAATTCTACAAACCAAGATATCGTCAAAGATAAGGAGAAAGAGGAAGCTGAAAAATCTGAGAGATGGTTTAGAAAGGTTGCCGAGCTGCATGATGTTCCAGATTTAACAAGTGCTGTATCTGATGAGGATTTCCCTGACATAATGCCCATGCGTAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAAGATCGTTCTTTGACAACACCAGCATACAAACGACGATTGGCCATGGAGCAATCTGGCAATACCAATTTTGTCCCCTTCGTCCCCTTCCCCCCAGATTACTTTGCCAAAAAGGACAAGCAACAGGCAGGTGGAACAGATTCAAGAGATAGGTCCAATGATGATTCATCTTCCATATCTGAGGTGGCCAAGAAGCCTGCGGAGATGTTAGATGATGGAGCTAGACCTGGACATAGTCCAAAACCTTCTGAACAGAGCTCAAATAACAATCATTTTGGTTCTATTTATGGGGCAACACCCAGTGGAAATTCAAGGCAGAGTTTCAATCAAGATCATAGTCCAAAACCTTCTGAACAGAGCTCAAATAACAATCATGTTGGTTCTCTTTATGGGGCAACACCCAGTGGAAATTCAAGGCAGAGTTTCAATCAAGATCCTGTTCCAAGTTTGACAACAGGGAGTGCATCCCCGGGCCCAGCATCTGAGAATCAGAGTGTTAGATCAGAGTGGACAGGAAAGAGTTTGGAGGGGTCTGCCGTGAAGGAACCAGATCCCCTGGACATGTCAGAGGAGGCAAAGGCAGAGAGGTGGTTCCGTCGAGTGGCACAGATTAAGGATATTTCTGAGCTCAGTCAGATTCCAGATGAGGATTTTCCTTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAAGCAAGAGGAAAACACCATTGGAAAGGAGATTGACATCTCAGCAGTACCGACGAAATCTTCCAACTGTGAACTCAGATCCGATTAAAACAGAAAATGAAGGTAGCTGA 2550 0.4525 MKLHLTLPTKMGGAAPRFLFLLSTPLPLLRHSHRHRHHKLLFLSSSSLSHRYFSSSPFSSSPLTLKIKASQQQHQHLHTQSHTSLLPEWSRFLSHVSSAGYLPSFSDHSFAAELPQPFLRDATACLAFARDRPNLLRLLSTRDIALVVEHCSPFLFRDAEDSVRKMKSFLSNCNANVIDTDRANTVDLMKFMLSYASIPFVSSERNTLCNTDLVESSVRNLFAELFKLSYSAPGPNSFDSVQTQTTGTFGQAKPPGQKIEMKRGDWICPRCNFMNFARNVKCLECEEARPKRQLAGGEWECPQCDFYNYGRNMTCLRCDCKRPGQISVDATNTMSHVGYKNGNNSDVDARLATNEEKAQRWFSKVSQLDSSADINSVIADEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYKKNLANNGTSGIEDSEAGDSINSHDTLDDILGHSAGIPQSDNKNIVAEQKASGDSLPSSASNTSLFKDVRGSSTGTVIPVPFKKVVLDTDVGYTSLGGSTQLSNNNSTNQDIVKDKEKEEAEKSERWFRKVAELHDVPDLTSAVSDEDFPDIMPMRKGENRFVVSKKKDRSLTTPAYKRRLAMEQSGNTNFVPFVPFPPDYFAKKDKQQAGGTDSRDRSNDDSSSISEVAKKPAEMLDDGARPGHSPKPSEQSSNNNHFGSIYGATPSGNSRQSFNQDHSPKPSEQSSNNNHVGSLYGATPSGNSRQSFNQDPVPSLTTGSASPGPASENQSVRSEWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPTVNSDPIKTENEGS* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1404 849 ProSitePatterns Zinc finger RanBP2-type signature. 299 318 IPR001876 -
Apr4g1404 849 PANTHER ZINC FINGER PROTEIN 13 848 - -
Apr4g1404 849 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 13 848 - -
Apr4g1404 849 MobiDBLite consensus disorder prediction 826 849 - -
Apr4g1404 849 MobiDBLite consensus disorder prediction 823 849 - -
Apr4g1404 849 ProSiteProfiles Zinc finger RanBP2 type profile. 262 291 IPR001876 -
Apr4g1404 849 MobiDBLite consensus disorder prediction 614 771 - -
Apr4g1404 849 ProSitePatterns Zinc finger RanBP2-type signature. 266 285 IPR001876 -
Apr4g1404 849 MobiDBLite consensus disorder prediction 661 753 - -
Apr4g1404 849 MobiDBLite consensus disorder prediction 419 454 - -
Apr4g1404 849 Pfam Zn-finger in Ran binding protein and others 297 323 IPR001876 -
Apr4g1404 849 Pfam Zn-finger in Ran binding protein and others 263 290 IPR001876 -
Apr4g1404 849 MobiDBLite consensus disorder prediction 621 639 - -
Apr4g1404 849 ProSiteProfiles Zinc finger RanBP2 type profile. 295 324 IPR001876 -
Apr4g1404 849 SUPERFAMILY Ran binding protein zinc finger-like 256 291 IPR036443 -
Apr4g1404 849 Gene3D - 255 292 - -
Apr4g1404 849 Gene3D - 293 325 - -
Apr4g1404 849 SMART zf_4 264 288 IPR001876 -
Apr4g1404 849 SMART zf_4 297 321 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1404 Apr-Chr4 13978830 13982722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1404 96 324 EF-hand Containing Proteins AT1G55040 37.154 1.42e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1404 - - aprc:113861495 1565.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1404 4 13978830 13982722 Apr4g1404 4 13978830 13982722 ECH