Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1400 ATGACGATGGTGCTATCATCAATATCATGTTCAACTGCGTGTTTTCCTTTTACTACTCAGCTCCAACCCCACCCTCTTGTTAGCCTCAAACCCTATACCCTTCCCACCCTTAGAGCTTCTACACCGTTACTCTACTCTACCAGACAAGCCTTTGACGCCGTCAACATTGCCGAAGATGTCACCCAGCTGATTGGAAATACGCCAATGATATACCTCAACAAAGTTACAGTAGGGTGTGTGGCAAATATTGCTGCAAAACTCGAGTCTATGCAGCCTTGCCGAAGTGTCAAGGACAGAATTGGCTATAGTATGTTATCTGATGCTGAAGAGATTGGGGCAATTTCTCCGGGGAAGACTACTTTGGTTGAACCAACAACTGGAAATACTGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCCGTTAATATTGAGAGGAGAGTCCTTTTACGTGCATTTGGTGCCAAGGTTGTTTTGACTGATGCTGAGAAGGGGCTAAAAGGGGCTGTTGACAAAGCTGAAGAAATTGTTCGCAGCACACCCAATGCTTACATGTTTCGACAGTTTGATAACATGACTAATACAAAGATTCACTACGAAACTACAGGGCCGGAGATATGGGAGGATACCATGGGTAATGTTGATGTATTGGTTGCTGGGATTGGAACTGGTGGCACTATTACTGGCACTGGCCGTTATCTGAAAATGATGAACAAAAAAATACAGGTGGTTGGGGTGGAACCTGCAGATAGAAGTGTAATTTCAGGAGACAATCCTGGTTTCATGCCAAGCATTTTGGATATCAAACTGCTTGACGAGGTTATCAAGATTACCAATGTTGAAGCTGTTGAAATGGCAAGGAGATTAGCTCTGAAAGAAGGCTTGCTGGTTGGGATTTCTTCAGGAGCTGCAGCAGCTGCTGCCATAAATTTAGCCAGACGGCCAGAGAATTCCGGGAAACTTATTGTGGTTATTTTTCCCAGTTTTGGTGAGAGGTATATTTCTACTGCCCTCTTCCATTCTATCTATGAAGAGGTTTTGAAAATGTAA 1080 0.437 MTMVLSSISCSTACFPFTTQLQPHPLVSLKPYTLPTLRASTPLLYSTRQAFDAVNIAEDVTQLIGNTPMIYLNKVTVGCVANIAAKLESMQPCRSVKDRIGYSMLSDAEEIGAISPGKTTLVEPTTGNTGLGIAFVAATKGYKLIVTMPASVNIERRVLLRAFGAKVVLTDAEKGLKGAVDKAEEIVRSTPNAYMFRQFDNMTNTKIHYETTGPEIWEDTMGNVDVLVAGIGTGGTITGTGRYLKMMNKKIQVVGVEPADRSVISGDNPGFMPSILDIKLLDEVIKITNVEAVEMARRLALKEGLLVGISSGAAAAAAINLARRPENSGKLIVVIFPSFGERYISTALFHSIYEEVLKM* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1400 359 TIGRFAM cysK: cysteine synthase A 61 349 IPR005859 GO:0004124|GO:0006535
Apr4g1400 359 Gene3D - 62 345 IPR036052 -
Apr4g1400 359 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 56 353 IPR036052 -
Apr4g1400 359 Pfam Pyridoxal-phosphate dependent enzyme 60 337 IPR001926 -
Apr4g1400 359 TIGRFAM cysKM: cysteine synthase 61 349 IPR005856 GO:0004124|GO:0006535
Apr4g1400 359 PANTHER CYSTATHIONINE BETA-SYNTHASE 37 359 - -
Apr4g1400 359 Gene3D - 98 200 IPR036052 -
Apr4g1400 359 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 86 104 IPR001216 GO:0006535
Apr4g1400 359 CDD CBS_like 65 345 - -
Apr4g1400 359 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 37 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1400 Apr-Chr4 13943759 13948376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1400 52 359 Miscellaneous Gene Families AT3G03630 77.922 1.30e-165 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1400 K22846 - gmx:100816974 587.8