Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1396 ATGGAGTCGAGCGTTTTGGAATGCATCGGCGTCGAAATAATCGGAGTAATGTCTCCGGTTTCAGTCTGCATGTTCCTCGTCGTTCTCCTCGTTTACTCTCTCTCCTCGCCGTCAACCACCCCCGACGCCACCATCCGCACCGCTGCAAACCTCGTCTACGCCGAAAACCCCTCCGATTCGGCCGCACAGAAGTTCGAAGGCGCGCTCCTAAACGCCGTCGTTTTCGTCATCCTCATCGCTATAGTCACCTTCCTGCTCGTCCTTCTCTACTACTACAACTGCACCTCCTTCCTCCGCCACTACATGCGCTTCTCTGCTTTCTTCGTTCTTGCTTCCTTGGGTGGATCCATTCTTCTCTCCCTCATTCAACGCTTCTCCATCCCTCTCGATTCCCTCACGTGCTTTCTCATCCTCTTCAATTTCACCGTCGTTGGCGTTCTCTCTGTGTTCGCCGTTGGAATCCCTATTTTGCTTCGTCAGGGTTATATGGTTTGTCTTGGGATAATTGTTGCGGCGTGGTTCACCAAATTGCCGGAGTGGACCACGTGGACATTGCTCGTTGCGCTTGCGGTTTATGATTTGGTGGCGGTTTTGGCCCCCGGTGGTCCCCTCAAGCTGCTTGTTGATTTGGCTTCGAGCAGGAATGAGGAGCTTCCGGCGTTGGTTTACGAGGCTCGTCCCACCATGCCGGTGAACGGCCGTGGCGGGGCTTCGACGTTGGGGTTTTTGGTTGCTGGGGTTTCGGAGTCGGAGAATTCGAGAATTGAGCTTCAGGTGGTGTCTAGGGAGAATGTGGGTCGGAGAAATGAGAATGAGGGTGAATTTCATGGGAATTTTGGCCATGGAGATTCTGTTGCGGGTTTTAGGAATGAGGAGAGTGAGGGTGGGAGGGATGATGAAGGAGAAAGATCGCCGTTGGTAGCGAATCGGTTATCGGATTCGATGATTCAATTTGGTGGAAGGGAGAGTGAGGTTGTTGTTAATGACGAGATGTCTCCACTTGTGGAGATGATTGGGGTTGGGAATGAAGAAGGGGAAGGAATGAGGAGGGGTGGGTTGGAGATTGCTGATAGGGGAATTAAGCTTGGTCTTGGGGACTTCGTTTTCTACAGTGTGCTTGTTGGTAGAGCTGCAATGTATGATCTGATGACAGTGTATGCTTGTTACATCGCCATTATATCGGGACTAGGTTGTACTCTTATGTTGTTGTCAGTGTGCCGCCAAGCTCTGCCTGCGCTTCCTATTTCAATTGCATTGGGTGTTCTTTTCTATTTTTTGACTCGGTTGCTCATGGAACCCTTCATTGTTGGGACAGCCACAAATTTGATGATGTTTTGA 1338 0.509 MESSVLECIGVEIIGVMSPVSVCMFLVVLLVYSLSSPSTTPDATIRTAANLVYAENPSDSAAQKFEGALLNAVVFVILIAIVTFLLVLLYYYNCTSFLRHYMRFSAFFVLASLGGSILLSLIQRFSIPLDSLTCFLILFNFTVVGVLSVFAVGIPILLRQGYMVCLGIIVAAWFTKLPEWTTWTLLVALAVYDLVAVLAPGGPLKLLVDLASSRNEELPALVYEARPTMPVNGRGGASTLGFLVAGVSESENSRIELQVVSRENVGRRNENEGEFHGNFGHGDSVAGFRNEESEGGRDDEGERSPLVANRLSDSMIQFGGRESEVVVNDEMSPLVEMIGVGNEEGEGMRRGGLEIADRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYIAIISGLGCTLMLLSVCRQALPALPISIALGVLFYFLTRLLMEPFIVGTATNLMMF* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1396 445 PANTHER PRESENILIN 1 445 - -
Apr4g1396 445 MobiDBLite consensus disorder prediction 287 304 - -
Apr4g1396 445 MobiDBLite consensus disorder prediction 270 304 - -
Apr4g1396 445 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016021|GO:0016485
Apr4g1396 445 PRINTS Presenilin family signature 176 183 IPR001108 GO:0004190|GO:0016021|GO:0016485
Apr4g1396 445 PRINTS Presenilin family signature 193 210 IPR001108 GO:0004190|GO:0016021|GO:0016485
Apr4g1396 445 Gene3D Presenilin 344 436 IPR042524 -
Apr4g1396 445 SMART psh_8 66 431 IPR006639 GO:0004190|GO:0016021
Apr4g1396 445 Pfam Presenilin 11 435 IPR001108 GO:0004190|GO:0016021|GO:0016485
Apr4g1396 445 PANTHER PRESENILIN 1 445 IPR001108 GO:0004190|GO:0016021|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1396 Apr-Chr4 13913515 13915481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1396 1 445 Miscellaneous Gene Families AT1G08700 63.557 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1396 K04505 - gmx:100819461 573.163