Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1393 ATGGCCACTGTCCTCAGAACTCCCATCTTCCGGCCACCGTCATGCAGCGTTTCTTCAAAGTCCCCGAAACCCTCGTGCGTTTCCGTTGGGTCTTTCAGACACGCCTCTAGGAGGAGACCCTCACCCATCAACTCTCTGCGGTTCCCTACCATTCCATCCCTACGGTTCGGCAAGTTCGTTCCCTTCGCTTTCGATGGCGACACCGAGGCCCCGCAAGTTCAGGAACCAGAGGTTCAGGTTCTGGACTCTTCAGATGGCGCTGTAGGTGTAGAGGACAGTGCAAATGATAATGAGGTTAGCGATGTGAATGAGACACCTGCCTCACCTTTCCTAGTGTTACTCCAATCTTACAAAGAAGCATTAGCTAACAATGATGAAGTCAGAGTTGCTGAGATGGAATCATCATTACAATCCATCGAAGAAGAGAAAACAGATCTTGAAGGAAAAATAGCTTCATTATCTGAAGAGTTATCAATAGAAAAGGATCGGATTCTTAGGATTAGTGCAGACTTTGACAATTTTCGGAAGAGAACAGAGAGAGATCGCCTTTCACTGGTCACAAATGCTCAGGGGGAAGTTGTGGAGAGTTTGTTGCCTGTAGTGGATAATTTTGAGAGAGCAAAAGCCCAGATTAAGGTGGAGACAGAGGCAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAACAGTTCATTGAAATTCTAACCTCACTTGGAGTTGAACCAGTGGACACAGTAGGAAGACCCTTTGATCCATTGCTACATGAAGCAATCATGCGTGAGGATTCTACTGAATTTGAGGATGGCATCATAATTCAAGAATTCAGAAAGGGTTTTAAACTTGGTGACCGTCTTTTGCGCCCATCAATGGTGAAGGTATCAGCTGGTCCTGGACCTGTAAAGCCTGAACAGGAAGCACCTCAAGAAGAACAAGCCAAAACTGAATCTTCTGACAGTAAAGAGGATGAGGGCGGCACAGAAACAGAGTCTGCATAA 999 0.4575 MATVLRTPIFRPPSCSVSSKSPKPSCVSVGSFRHASRRRPSPINSLRFPTIPSLRFGKFVPFAFDGDTEAPQVQEPEVQVLDSSDGAVGVEDSANDNEVSDVNETPASPFLVLLQSYKEALANNDEVRVAEMESSLQSIEEEKTDLEGKIASLSEELSIEKDRILRISADFDNFRKRTERDRLSLVTNAQGEVVESLLPVVDNFERAKAQIKVETEAEEKINNSYQSIYKQFIEILTSLGVEPVDTVGRPFDPLLHEAIMREDSTEFEDGIIIQEFRKGFKLGDRLLRPSMVKVSAGPGPVKPEQEAPQEEQAKTESSDSKEDEGGTETESA* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1393 332 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 241 297 IPR009012 GO:0006457
Apr4g1393 332 PRINTS GrpE protein signature 165 181 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr4g1393 332 PRINTS GrpE protein signature 193 208 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr4g1393 332 PRINTS GrpE protein signature 248 263 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr4g1393 332 PRINTS GrpE protein signature 275 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr4g1393 332 CDD GrpE 161 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr4g1393 332 MobiDBLite consensus disorder prediction 292 332 - -
Apr4g1393 332 ProSitePatterns grpE protein signature. 251 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr4g1393 332 PANTHER GRPE PROTEIN HOMOLOG 24 314 - -
Apr4g1393 332 Gene3D Head domain of nucleotide exchange factor GrpE 240 295 IPR009012 GO:0006457
Apr4g1393 332 Coils Coil 122 163 - -
Apr4g1393 332 PANTHER GRPE PROTEIN 24 314 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr4g1393 332 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 144 240 IPR013805 -
Apr4g1393 332 Hamap Protein GrpE [grpE]. 74 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr4g1393 332 Gene3D - 123 238 IPR013805 -
Apr4g1393 332 MobiDBLite consensus disorder prediction 307 332 - -
Apr4g1393 332 Pfam GrpE 135 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1393 Apr-Chr4 13866762 13872481 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1393 K03687 - gmx:100820521 518.079