Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1391 ATGGCGGAAGACCTGAAGAAGAAGCTGTTGAGAACGTCGCAAGAGGAAGAACATGAAGAAGAGGAACTACCATTGCTGAAAAGGATGTGGAATGAGAGCAAAGTTATGTGGGTTGTCGCTGCCCCAGCCATATTCACTAGATTCTCTACCTTTGGTATCAATGTTATAAGCCAAGCCTTTGTTGGTCATATTGGCTCAACCGAACTCGCTGCTTTTGCTCTTGTATTCACTGTCCTTATACGCTTCGCCAATGGTATTCTGTTAGGAATGGCTAGTGCGTTGTCAACACTATGTGGACAAGCATATGGTGCAAAAGAATATGGCATGATGGGAGTGTATCTTCAAAGATCGTGGATAGTTTTGTTCCTAACTGCAGTTATTCTTCTTCCTGTGTTCATCTTCACAAGCCCAATTTTGACACTCTTAGGCCAAGATGAAAGCATAGCAAAAGTTGCAGGGACCATTTCTCTTTGGTCAATTCCGGTTATGTTTGCTTTCATCGTCTCATTCACTTGCCAAACATTTCTTCAATCTCAAAGCAAGAATGTCATTATCGCCTTCTTGGCCGCATTCTCAATAATTATTCATGTGTTCCTCTCTTGGCTCTTGACCATAAAATTCAATCTTGGCATTGCTGGTGCAATGACTTCAACAAGTTTAGCATACTGGATTCCCAACATTGGTCAACTTATATTTGTTACTTGTGGTTGGTGCTCTGATACTTGGAAAGGTTTCTCATTTTTAGCATTCAAAGAGCTTTGGCCTGTTGTCAAGATGTCCCTTTCAGCTGGTGCCATGTTATGTCTTGAGCTCTGGTACAACACAATATTGGTTCTTTTGACAGGTAACATGGAAAATGCGGAGGTTGAAATTGATGCTCTATCTATATGTCTCAACATCAATGGATGGGAAATGATGATATCACTTGGTTTCATGGCAGCTGCAAGTGTTAGAGTGGCAAATGAGCTTGGAAAAGGAAGCGCCAAAGCTGCAAAGTTCTCTATTGTTGTGACAGTGCTCACATCATTCACCATAGGGTTCTTTCTATTTTTATTTTTCCTATTTTTTAGGGAAAGACTTGCTTACATATTTACCTCAAATAAAGATGTGGCCGCTGCTGTTGGAGACTTGTCTCCTTTGCTATCAGTCTCTATATTACTCAACAGTGTTCAACCTGTACTCTCAGGAGTAGCTATTGGAGCAGGGTGGCAAAGCATTGTAGCATATGTGAATATTGGGTGCTATTACGTCATAGGTATTCCTGTTGGGGTTGTGCTTGGTAATGTTTTCCATTTGGAAGTCAAGGGAATCTGGATTGGAATGTTGTTTGGAACATTGATTCAAACTATAGTGTTAACAGTAATCACCTACAAAACTAACTGGGATGAACAGGTTACCATAGCTCAAAGTCGTGTTAGCAGGTGGTCCAAGCTGGACAGTACTGATCAAGAAAGAGAAACAAAACATGTCAAATAA 1476 0.4079 MAEDLKKKLLRTSQEEEHEEEELPLLKRMWNESKVMWVVAAPAIFTRFSTFGINVISQAFVGHIGSTELAAFALVFTVLIRFANGILLGMASALSTLCGQAYGAKEYGMMGVYLQRSWIVLFLTAVILLPVFIFTSPILTLLGQDESIAKVAGTISLWSIPVMFAFIVSFTCQTFLQSQSKNVIIAFLAAFSIIIHVFLSWLLTIKFNLGIAGAMTSTSLAYWIPNIGQLIFVTCGWCSDTWKGFSFLAFKELWPVVKMSLSAGAMLCLELWYNTILVLLTGNMENAEVEIDALSICLNINGWEMMISLGFMAAASVRVANELGKGSAKAAKFSIVVTVLTSFTIGFFLFLFFLFFRERLAYIFTSNKDVAAAVGDLSPLLSVSILLNSVQPVLSGVAIGAGWQSIVAYVNIGCYYVIGIPVGVVLGNVFHLEVKGIWIGMLFGTLIQTIVLTVITYKTNWDEQVTIAQSRVSRWSKLDSTDQERETKHVK* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1391 491 PANTHER PROTEIN DETOXIFICATION 14 474 - -
Apr4g1391 491 CDD MATE_eukaryotic 32 465 IPR045069 GO:0042910|GO:1990961
Apr4g1391 491 Coils Coil 2 22 - -
Apr4g1391 491 Pfam MatE 265 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr4g1391 491 Pfam MatE 42 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr4g1391 491 PANTHER MULTIDRUG RESISTANCE PROTEIN 14 474 - -
Apr4g1391 491 TIGRFAM matE: MATE efflux family protein 42 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1391 Apr-Chr4 13842369 13845320 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1391 K03327 - gmx:100792122 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1391 4 13842369 13845320 Apr4g1391 4 13842369 13845320 ECH