Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1344 ATGCCCAAAGGCGTAATCTCAGACGAAGAAGATGACGTCGAACTCGACGAGGAAGAGAGAGAACCCGTTGACGGGGATGAAATGGAAGAGGGTCGCGATATGGACAACGAAGACGAGGATGAAGAAGAGGAAGGCCAGGATGAATATGAAAATGACGGATTTATAGTGGATGACATCGAGGATGAAGAGGAGCAGGATGAAGAAGAGAGAGCAGACAGTGACGAGGAGCGACAAAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAATTGCTGGAAGACAATAATATCAATATTCATAGACGAAAGGAGAGCAAAAAGTTCAAGCGGTTGAAAAAAGGCCGGAGGGATACTGAGGAGGAGCCCTCTGGGTTATCAGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGCAGCTCCACTTGATGACACTGTTGAAGAGGAGGAGCAAGGAGAGGAGGAGGAAGATGCTGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTCGATGAAGAAGAAGTTGATGAGAATGGAGCTCCTATGAGGCAGAGGAAGCTGAAGAAAAAGAAAACTAGGCAGGCTCCAGGAGTATCTTCCTCAGCTTTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTTTGAATCGTCAGAAAAACCTAGAAATGAGTGAATTTAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTACTTTCTGAGAAGTATATGACAGAGAAGGATGACCGGATTAGGGAGCTTGATATTCCAGAGAGAATGCAGATATCAGAAGAGAGTACTGGTTCTCCTCCATTGGATGGAAGTAGTATAGATGAAGAGAGTCAGTGGATAGTTAATCAACTTGTAAATGGAGCAGTCCCTTGGATTTGCAAGAAGGTCCCAAGCTCCCAAAATAATGAAAAGGACCTACCAATTGACAAGGATGATATTATCAGATTTTTGGAACTGCACCATGTGCAAAAATTAGATATTCCTTTTATTGCAATGTATCGGAAGGAGGAGTGCTTAAGCTTATTGAAAGACCTAGAGCAACCTGAATCTGGCGATGAGAATTGGGATAAGAATAACAAGACACCTACTCTGAAATGGCACAAGGTACTTTGGGCTCTTCACGACTTGGACAATAAGTGGTTGCTTCTTCAGAAGCGAAAGAGTGCCCTGCAATCATACTATAGTAAACGGTTTGAAGAAGAGTCCCGCCGTGTTTATGATGAAACCAGACTAAACTTGAATCGTCAATTGTTTGAATCAGTTATGAGATCACTGAAGGAAGCGGAGTCTGAGAGGGAGGTTGACGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCTGGTGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCAAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCAGGTCTATGGGAGGTTGCAAATAGATTTGGGTGTAGTTCTGAGCAACTTGGATTATGTCTTTCTCTAGTTGAGCTGCATGAGTTGGAAGATCCAAAAGAAACACCAGAGGAGATGGCTTCTAACTTTACATGTGCTATGTATGATACTCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCAGCTGTTGAGATAAGTTGTGAACCTAGCATTAGGAAACATGTTCGTAGCCACTTTCTTGACCACGCTGTAGTGTCTACTTGTCCTACTGCTGATGGAAATACAACAATAGATTCTTTTCATCAGTTTGCTGGGGTGAAGTGGCTGCGGGAGAAGCCTTTGTCTAAATTTGAAGATGTGCAATGGCTGCTTATACAGAAGGCAGAGGAGGAGAAACTCATTCAAGTTACTATTAAGCTGCCTGAAGATTACCTTAATAAGTTAATAGATCAATTCAATGAGTATTATATTAGTGACAGTGTCAGCAGATCTGCCCAACTGTGGAATGAACAGAGGAAGTTGATACTGCATGATGCAATTTTTCGATTTCTTTTACCTTCGATGGAAAAAGAGGCAAGAGGTGTGTTGGCAAGCAAAGCAAAGAGTTGGTTACTTATGGAGTATGGGAAAGCCTTGTGGAATAAGGTTTCTGTGGGACCTTATCAACAGAAGGAAAATGATCTTGGTTCAGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTGTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTCATGTTAGATTCATCAGGAGAAGTTTTGGATGTGCTTTACATTGGGTCCCTTACTTTAAGGTCACAGAATGTTAATGACCAACAACGGAAGAAGAATGACCAGGAACGTGTGTTGAAGTTTATGACTGATCACCAACCACATGTCGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACTCGTTTGAAGGAAGATATATATGAGGTCATTTTTAAGATGGTGGAGGAAAACCCTAGAGATGTTGGGCATGAAATGGATGGGCTCAGCATTGTGTATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCACAACAAGGTATAGTGAGGCGGGCTGTTTCTCTTGGTCGATATCTCCAGAACCCATTGGCGATGGTTGCAACATTATGTGGACTTAGAAGGGAAATATTGTCTTGGAAACTGAGCCCGTTGGAAAGCTTTATCAATCCAGATGATAAATTTTCAATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTGGCAATTAGTCATGAGTGGTTATTTGCTCCATTACAATTTATTTCTGGGCTTGGTCCACGGAAGGCTGCATCCTTACAGAGATCCCTGGTAAGAGCTGGTGCAATTTTTACTCGCAAAGACTTTTTAACAGAGCATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTTCGGCGAAGTGGGTTAGCTGCTAGCAGCAGCCAATTTATCGATTTACTGGATGATACAAGAATTCATCCTGAATCTTATATTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGCACAGGTGATGCAAATGATGATGATGATGCGCTGGAGATGGCCATTGAGCATGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGACGTTGAGGAATATGCTTCTGGGAAAAAACGTCAAAACAAAATTCAGACTTTCTATGACATAAAAAGAGAATTGATTCAAGGTTTTCAGGATTGGCGGAAGCAATATGAAGAACCAAGTCAGGATGAGGAATTCTATATGATTTCAGGTGAGACTGAGGAGACCCTTGCTGAAGGCAAAATTGTCCAAGTCACAGTTCGCAGAGTGCAAGCTCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACTGGAATCCTCATGAAAGAAGACTATACAGATGACTGGAGAGATGTAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATCCAAAAGAATAGGTATCAAGTCTTCCTTGTTTGTAAGGATAGTGAAATGAGAAGTAATCGGTTACAGAATAACCGTGATCTTGACCCATATTACCACGAAGACCGGAGCTGTTTGCAGAATGAACATGACAAAGCTCGGAAAGAAAAGGAGCTTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCTGATGAAGCAATGGAGTTCTTATCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGTGGACCTTCATATCTTACTTTAACTCTTAAAATTCATGATGGAGTTTATGCCCACAAAGATATAGTTGAAGGGGGGAAGGAGCACAAGGACATCACAAGCTTACTCAGGATTGGGAAGACGCTAAAAATTGGAGAGGACACTTTTGAGGACTTAGATGAGGTTATGGACCGTTATGTTGATCCATTGGTGACTCACTTAAAGGCAATGCTAAACTATCGCAAGTTCCGAAAGGGTACAAAGGCAGAAGTTGATGAATTTTTGAGGATGGAAAAGGCCGAGTATCCTATGCGCATAGTCTATAGTTTTGGCATCTCCCATGAACATCCTGGCACATTCATATTAACTTACATTAGAAGTACAAATCCACACCATGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTCCGGAAAAAGATGTTTGAGGACATTGACCGACTTGTGGCATATTTTCAGAGGCATATTGATGATCCCCAGCATGATTCGGCGCCCTCCATTAGATCTGTTGCTGCTATGGTACCAATGCGAAGCCCTGCAGCTGGTGGCTCATCAGGGGGATCTGGGGGTAGTGGCTGGGGGGGTTCAAATAATGAGGGTGGCTGGAGAAGTCACTCTTATGATAGGGATCGGTCATCTACTCCTGGTTCCCGGACAGGACGGGGTGATTACAGAAACAGTGGGAATCGGGATGAACATCCTAGTGGAGTTCCTCGTCCATATGGGGGTGGACGGGGACGTGGTCGGGGTCGGGGTTCTTATGACCACAGCAGTAGAGGACACAACTCCAATAATGAAAGGCAGGACTCTGGTCATGGTTCCCGATGGGGTTCTGCCACAAAGGATGCAGATGATGGTTTGAGCAATTTTCCAGGGGCCAAGGTTCAAAATTCTCCTGGAAGGGAAGCATTTCCTGGTGGTTGGGGTGGAAGTGGTTGGGGAAGTGGAGCGAATAACAGCGACAATGGTGGCTGGGGACATGGAAGTGGTGGTGCTGGTCTAAGTGATGGGGGTGAACATGGAAGCTCAGGCTGGGGAACTGGCTCGAAGAAAGCAGCTGAGAACGGATGGTCTGGAAATTCTGGTGGTTGGTGA 4932 0.4333 MPKGVISDEEDDVELDEEEREPVDGDEMEEGRDMDNEDEDEEEEGQDEYENDGFIVDDIEDEEEQDEEERADSDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEAAPLDDTVEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEFRETRLEDEFEPIVLSEKYMTEKDDRIRELDIPERMQISEESTGSPPLDGSSIDEESQWIVNQLVNGAVPWICKKVPSSQNNEKDLPIDKDDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKDLEQPESGDENWDKNNKTPTLKWHKVLWALHDLDNKWLLLQKRKSALQSYYSKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVANRFGCSSEQLGLCLSLVELHELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSKFEDVQWLLIQKAEEEKLIQVTIKLPEDYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKSWLLMEYGKALWNKVSVGPYQQKENDLGSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYIGSLTLRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVSLGRYLQNPLAMVATLCGLRREILSWKLSPLESFINPDDKFSMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKKRQNKIQTFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDVIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDLDPYYHEDRSCLQNEHDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKIHDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGTKAEVDEFLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGGSGGSGWGGSNNEGGWRSHSYDRDRSSTPGSRTGRGDYRNSGNRDEHPSGVPRPYGGGRGRGRGRGSYDHSSRGHNSNNERQDSGHGSRWGSATKDADDGLSNFPGAKVQNSPGREAFPGGWGGSGWGSGANNSDNGGWGHGSGGAGLSDGGEHGSSGWGTGSKKAAENGWSGNSGGW* 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1344 1643 SUPERFAMILY RuvA domain 2-like 911 1001 IPR010994 -
Apr4g1344 1643 Pfam Holliday-junction resolvase-like of SPT6 739 895 IPR028231 -
Apr4g1344 1643 SUPERFAMILY RuvA domain 2-like 1014 1103 IPR010994 -
Apr4g1344 1643 SUPERFAMILY Ribonuclease H-like 740 895 IPR012337 -
Apr4g1344 1643 SUPERFAMILY Nucleic acid-binding proteins 1123 1203 IPR012340 -
Apr4g1344 1643 MobiDBLite consensus disorder prediction 1528 1547 - -
Apr4g1344 1643 CDD SH2_Nterm_SPT6_like 1250 1338 IPR035019 -
Apr4g1344 1643 MobiDBLite consensus disorder prediction 163 199 - -
Apr4g1344 1643 SMART rnase_8s 740 858 IPR006641 GO:0006139
Apr4g1344 1643 Pfam Helix-hairpin-helix motif 899 1000 IPR032706 -
Apr4g1344 1643 Gene3D SH2 domain 1348 1444 IPR036860 -
Apr4g1344 1643 Coils Coil 1222 1242 - -
Apr4g1344 1643 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1621 - -
Apr4g1344 1643 Gene3D - 497 933 IPR023323 -
Apr4g1344 1643 ProSiteProfiles S1 domain profile. 1128 1199 IPR003029 GO:0003676
Apr4g1344 1643 MobiDBLite consensus disorder prediction 139 161 - -
Apr4g1344 1643 Gene3D - 262 1003 - -
Apr4g1344 1643 MobiDBLite consensus disorder prediction 290 305 - -
Apr4g1344 1643 CDD SH2_Cterm_SPT6_like 1349 1435 IPR035018 -
Apr4g1344 1643 PIRSF Spt6 3 1504 IPR017072 GO:0032968
Apr4g1344 1643 Gene3D - 294 496 IPR023319 -
Apr4g1344 1643 MobiDBLite consensus disorder prediction 286 305 - -
Apr4g1344 1643 MobiDBLite consensus disorder prediction 1 227 - -
Apr4g1344 1643 Pfam Acidic N-terminal SPT6 35 124 IPR028083 -
Apr4g1344 1643 Gene3D SH2 domain 1236 1347 IPR036860 -
Apr4g1344 1643 SMART S1_6 1126 1199 IPR022967 -
Apr4g1344 1643 Gene3D - 1121 1208 IPR012340 -
Apr4g1344 1643 SUPERFAMILY Tex N-terminal region-like 335 719 - -
Apr4g1344 1643 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1621 IPR017072 GO:0032968
Apr4g1344 1643 Coils Coil 56 79 - -
Apr4g1344 1643 MobiDBLite consensus disorder prediction 9 71 - -
Apr4g1344 1643 Pfam SH2 domain 1217 1434 IPR035420 -
Apr4g1344 1643 Pfam HHH domain 1015 1102 IPR041692 -
Apr4g1344 1643 SUPERFAMILY SH2 domain 1253 1339 IPR036860 -
Apr4g1344 1643 Gene3D - 730 1120 IPR037027 GO:0006139
Apr4g1344 1643 MobiDBLite consensus disorder prediction 1456 1643 - -
Apr4g1344 1643 MobiDBLite consensus disorder prediction 72 92 - -
Apr4g1344 1643 Gene3D - 1009 1101 IPR042066 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1344 K11292 - gmx:100809136 2842.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1344 4 12988921 12999245 Apr4g1344 4 12988921 12999245 ECH