Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1333 ATGGCAGAGGTGTCGTTGTGTAGCAGCAACTCCTCTGAGCTCAGTCCAGACGAAGAGAGGATCATGATCAGAGACATTGCTCTTGCTTCCCAAGCTAACAGCAAAGAAGGCGACACCTTCTTCTTGATCACCCAGAGGTGGTGGCAACATTGGATTGAATATGTGAACCAAGACCAGACAAACACTTCATATGACGGATCTTCCTTATCAGAACATTGTGATTTGGCTAATTCAAGTGCTTTAAAGAAGCCAGCTGGCATTGATAATTCTGATTTGATAGATGATGCTGTGTCGGAGGACTCTGGCACGGGTATTGAGATTCATGATACTCTTTTAGAAGGCCGTGATTATGTATTACTTCCCCAAGAAGTTTGGAATCAATTATTTAGATGGTATGGTGGTGGACCTACGTTGGCAAGGAAAGTTATTAGTTCAGGTCTGTCCCAAACTGAATTGACAGTAGAGGTGTATCCTTTACGGCTTCAATTACTTGTGTTGCCAAAAAATGATCGTTCTGCTATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAAAAAAGCTTGCGAAATATTTGATCTCCAGCCAGACCAAGTGTGTATTTGGGATTATTATGCCCGTCGGAAGCACGCCTTGATGAATGACATGGACAAGACCCTTGATGATGCTAATTTACAAATGGACCAAGATATTCTTGTTGAGGTCATCAGCAATACAAATAACACAAGTTCTGCTCAAGAAAATGGGTCTGCACAGAAGGAAGCAAGTTCTGTTCTTGTGGAGCCTTCCAAATCTAGCTTATCAATTGCTGGTGGCTTGTCTGCTAGCAGTAGCAAGGGTGCATCTAGAGGCTACAACATGGAGCCTTCTTCATCTCAGAACCTAAATTCTCCGGTCAGAGATGTGGAAAACCCATATGGAAGCAGTGGTGTCACCACAAGAGGTTCATTTGGTGGTCTCACTGGGTTGCTGAATCTTGGCAATACTTGTTTCATGAATAGCGCAATTCAGTGCCTTGTTCATACACCAGAATTTGCTAGGTACTTCAGGGAAGACTATCATAGAGAGATAAATTGGCAAAATCCATTGGGCATGGTTGGTGAGTTAGCCCTAGCATTTGGTGAATTGCTTCGAAAACTATGGGCACCTGGGCGAACACCCATTGCTCCTCGGCCATTTAAATCAAAGCTTTCTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGGTTTGCCTGTTGACTGGAAATTTTACCATCTCTTCAATTTCCATGGTGCAGTCTGTTACCACTTACCACATTTGTTCCATTATTTTTTTACAGGAGCTTTTAGCATTTCTGCTGGATGGTCTCCATGAAGACTTGAACCGTGTAAAGCACAAACCATATATAAGGTCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCTGATGAGTATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGCCAGGGGCAATACAAGTCAACTTTGGTTTGTCCAGTTTGCAATAAAGTCTCGGTCACATTTGATCCTTTTATGTACCTTTCCCTGCCACTCCAGTCCACCACCAGCAGGACAATGACCGTGACAGTTTTTACTTGTGATGGAACTGCCCTTCCATCTTCTTGTACAGTAACTGTGCCTAAGCAGGGACGATGCAGGGATCTTATCCAGGCACTTAGCAACGCTTGCTCGTTGAAACATAATGAGAGGCTATTGCTTGTGGAGATAAGAAACCATTTGATCCATAGATTTTTTGAAGATCCTCTTCTATTGTTGTCTACAATCAAAGATGATGACCGTCTTGCTGTTTACAAGGTTCCAAAGCTAGACAAGAACACAAAATATCTCCAGTTGATACATCGCCGGAGAGAGCAGAGTAGTGACTCGCAGACCATATCAGGATGGAAACCATATGGAACCCCTATAGTTTCATTGATCTCATGCGATGAAACAGTCACAAGAGGTGATATACAAGTAATAGTTAATCGTATGCTCTTTCCTCTGCTAAGGAAAGGTAGCAATGTGGAACAAACTTTTGCTTCTGAAACCAGCATCCCAAAAGAAACATCTGATCAATGCAATTTTATATCTGGTGATGCAAGTGCTACCAACATGGTGTCAAATTCAGTAAATAAGGATTCTACTGATTCCAAGACACCACCAATGCCAACATTACCTCTTCTCTTGGTAGATGAAAGCAATGCTTGCATTGATCTTTCAATGGGAGAGGAGAAAGCAGTTAAATTATCACCATCATCACCAACAATTCTAGTGTATATTGATTGGTCTCAGAAGCTGTTGGAGAAGTATGATACTCATTCACTTGAGACTTTGCCCGAAGTTTTAAAATATGGGCCTGTAACCAAGAAGGCTCGTACTGAACCTCTCTCCTTATACACCTGCTTGGAAGCTTTTCTGCGTGAAGAACCTCTGGTGCCTGAAGATATGTGGTACTGTCCTAAGTGCGAGGAGAGGCGACAAGCCAGCAAAAAGCTTGATTTGTGGAGGCTCCCTGAGGTTTTGGTCATTCATTTGAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTAGAGACTTTTGTTAACTTTCCCATTCATGATTTTGATTTAACAAATTACATAGCCAACAAAAACAACTCTCGGCGTCAACTGTACGAACTGTATGCTCTTACAAACCATTATGGTAGCATGGGTAGCGGTCATTACACTGCACATATTAAGCTTTTAGATGAGAACAGGTGGTACAATTTTGATGACAGCCACATATCACCCATAAGTGAAGATGAGGTTAACACTGCTGCTGCCTATGTTCTATTTTACCGGAGGGTAAAGACCGATGCTGCCACTGTTAGCAACGGGGCTTAG 2907 0.4245 MAEVSLCSSNSSELSPDEERIMIRDIALASQANSKEGDTFFLITQRWWQHWIEYVNQDQTNTSYDGSSLSEHCDLANSSALKKPAGIDNSDLIDDAVSEDSGTGIEIHDTLLEGRDYVLLPQEVWNQLFRWYGGGPTLARKVISSGLSQTELTVEVYPLRLQLLVLPKNDRSAIRISKKETIGQLHKKACEIFDLQPDQVCIWDYYARRKHALMNDMDKTLDDANLQMDQDILVEVISNTNNTSSAQENGSAQKEASSVLVEPSKSSLSIAGGLSASSSKGASRGYNMEPSSSQNLNSPVRDVENPYGSSGVTTRGSFGGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKSKLSRFAPQFSGHNQHDSQVCLLTGNFTISSISMVQSVTTYHICSIIFLQELLAFLLDGLHEDLNRVKHKPYIRSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTTSRTMTVTVFTCDGTALPSSCTVTVPKQGRCRDLIQALSNACSLKHNERLLLVEIRNHLIHRFFEDPLLLLSTIKDDDRLAVYKVPKLDKNTKYLQLIHRRREQSSDSQTISGWKPYGTPIVSLISCDETVTRGDIQVIVNRMLFPLLRKGSNVEQTFASETSIPKETSDQCNFISGDASATNMVSNSVNKDSTDSKTPPMPTLPLLLVDESNACIDLSMGEEKAVKLSPSSPTILVYIDWSQKLLEKYDTHSLETLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCEERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISPISEDEVNTAAAYVLFYRRVKTDAATVSNGA* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1333 968 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 899 916 IPR018200 GO:0004843|GO:0006511
Apr4g1333 968 Gene3D - 6 156 IPR035927 -
Apr4g1333 968 Gene3D - 157 245 - -
Apr4g1333 968 Gene3D Cysteine proteinases 699 965 - -
Apr4g1333 968 SUPERFAMILY Cysteine proteinases 318 958 IPR038765 -
Apr4g1333 968 MobiDBLite consensus disorder prediction 269 312 - -
Apr4g1333 968 SMART dusp 33 146 IPR006615 GO:0004843
Apr4g1333 968 Gene3D Cysteine proteinases 443 578 - -
Apr4g1333 968 Gene3D Cysteine proteinases 312 428 - -
Apr4g1333 968 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 322 957 IPR028889 -
Apr4g1333 968 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Apr4g1333 968 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 445 967 - -
Apr4g1333 968 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 12 417 - -
Apr4g1333 968 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Apr4g1333 968 Pfam Ubiquitin carboxyl-terminal hydrolase 322 417 IPR001394 GO:0004843|GO:0016579
Apr4g1333 968 Pfam Ubiquitin carboxyl-terminal hydrolase 445 954 IPR001394 GO:0004843|GO:0016579
Apr4g1333 968 CDD Peptidase_C19R 802 955 - -
Apr4g1333 968 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Apr4g1333 968 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 417 - -
Apr4g1333 968 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 445 967 - -
Apr4g1333 968 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 323 338 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1333 Apr-Chr4 12812871 12821973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1333 810 963 Miscellaneous Gene Families AT4G31670 33.121 2.25e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1333 - - aprc:113861233 1896.32