Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1322 ATGGATTCGTTGTGTCTCTCCAACGATTCAGTTTCTGGATTCAAAGACAAGGAGTCAATGGTTGACCCCTTCTTGGTTGAGGCTCTTCAGAACCCTCGTCATCGCCTCACCATTTTGAGGATGGAGTTGGATATCCAGAGGTTTCTGAACAATGCTGATCAGCAGCATTTTGAGTTCCAACATTTTCCTTCTTCCTATCTCCGACTGGCTGCACATCGTGTTGCACAACACTACAATATGCAGACAATGGTTCAGGATAATGGCTTAGATGGACAGGGAAGTAAAATTCTGGTGAGGAAGTTGCCAGAAAGCAAGCCTTATAAAACTAGTTTGAATGAAGCCAATGAAGCTGGGATGAAAGGAAATCCTGTGAGAAGTGTAGAAGAGAGGAAGGAGGAATATGATCGGGCACGAGCACGTATCTTTAGTGGCTCTAGAAGTTCTGATTCATGTGATACCTATTCCCTGGTCTCAATGGATGGGAAAAATTCTTCTACAAGCACGGATGAGAATGAAACTAGCAAGAACCCCATGACTGATTCAGAAAGATGCATTAATGTCAGCATCAGGGATAATAGTTCTACTCGAGTTGCCATTTTCAGAGATAGGGAAAAGGACCGTAGTGATCCAGATTATGATCGTAGCTATGGAAGGTATGCAAGAAGTATTCCAACCTCTGCTGTTAACTTGGTGCCGTTTAATTTGCAAAAAGCTCAACATTCGTTTGCTCAATATGACACTGCTTTTAATCAGTTGGGTCAGATGCCACAAACTCAGGCATCACTTGGCTTTGGGCCTCCATCAAGCCCAATAATGAGTCCGTTTTGTACCACAGGATTGAATCAGGCATCTAGGGATGGTGCTTATCTACAGTGGCCAAGTGCTGCAATGATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCACAGGATTATTAG 987 0.4326 MDSLCLSNDSVSGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQRFLNNADQQHFEFQHFPSSYLRLAAHRVAQHYNMQTMVQDNGLDGQGSKILVRKLPESKPYKTSLNEANEAGMKGNPVRSVEERKEEYDRARARIFSGSRSSDSCDTYSLVSMDGKNSSTSTDENETSKNPMTDSERCINVSIRDNSSTRVAIFRDREKDRSDPDYDRSYGRYARSIPTSAVNLVPFNLQKAQHSFAQYDTAFNQLGQMPQTQASLGFGPPSSPIMSPFCTTGLNQASRDGAYLQWPSAAMMYAHSYDQFRHAVFQAPFGQQPLSFDYSQDY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1322 328 CDD R3H_encore_like 34 100 - -
Apr4g1322 328 ProSiteProfiles R3H domain profile. 35 102 IPR001374 GO:0003676
Apr4g1322 328 Gene3D - 11 132 IPR036867 GO:0003676
Apr4g1322 328 Pfam SUZ domain 102 145 IPR024771 -
Apr4g1322 328 ProSiteProfiles SUZ domain profile. 73 146 IPR024771 -
Apr4g1322 328 PANTHER OS05G0411600 PROTEIN 105 327 - -
Apr4g1322 328 PANTHER OS05G0411600 PROTEIN 8 105 - -
Apr4g1322 328 SMART R3H_4 19 101 IPR001374 GO:0003676
Apr4g1322 328 MobiDBLite consensus disorder prediction 145 184 - -
Apr4g1322 328 SUPERFAMILY R3H domain 8 123 IPR036867 GO:0003676
Apr4g1322 328 Pfam R3H domain 37 88 IPR001374 GO:0003676
Apr4g1322 328 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 105 327 - -
Apr4g1322 328 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 8 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1322 Apr-Chr4 12569928 12573762 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1322 - - gmx:100814835 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1322 4 12569928 12573762 Apr4g1322 4 12569928 12573762 ECH