Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1306 ATGGCTCGGCGTTTGATTCCACTGTTGAATCGGGTTTTGGGGGAGAAAATCGTCCCTCCATCAAAAATCAACACTGGCATTTTGGTACCCGAGAAATCTTCCCAGCTGAAATCTGGAAAAGCTATTGCTGTTGGCTCTGACATTCACAGTAAGGATGGGAAGGTAATTCCTGTGGCTATAATGGAAGGTGACACTGTTCTTTTGCCTGAATATGGAGCAACTGAGGTGAAGCTTGGTAACAAAGAGGAAATTACAAACACAAGAGAAGCTAGTAATGCATATGACAAATACAATATAAAAAGTTTGTCTGGATGCCTGAACTGGACTTCAAGGCCAAATGATAATAGTCTTGCTACCTGCCATTTGCTAAGTCGTCATTTTACATCTGAACACAATGATGGATGCACAAAGGAGTTCTCAAGGAAGCTTCTTGCAAGTATTCCAGACTTTGTAAAGATAGTGGAGGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCTATTGTTCCTACTGATGTAAAAGTTGAGTTGATAAACCTGCTTGTTTCTACTGGGCTGTCTATTGTTGAGGCAACAAGTTTTGTCTCACCAAAATGGGTACCACAATTGGCAGATGCAAAGGATGTATTAGCAGCAATTCAAAATGTTGAGGGTGCTAGATTTCCTGTCTTAACTCCGAATCTCAAAGGTTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAGGTTGCTGTTTTCCCTGCAGCTTCTGAATCATTCTCTAAAGCAAATCTTAATTGTGGCATTGAGGATAATCTTGCTCGTTGCCGTGACATTACTTTAGCTGCTAGAAGCTTCTCAATCCCAGTTCGTGGATATATATCATGTGTTGTGGGATGCCCTTTGGAAGGAAATATTGCTCCAGCTAAAGTAGCCTATGTGGCAAAATCACTCTATGAGATGGGATGCTCAGAAATTTCACTAGGGGATACAATTGGTGTTGGTACACCTGGTACTGTCATTCCGATGCTTGAGGCTGTTCTTGATGTTGTCCCAACTGACAAGCTTGCTGTCCACTTTCATGATACTTACGGCCAGGCGCTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAACACTGTGGATTCATCTGTCTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTTGCCACTGAGGATGTTGTTTACATGCTGAATGGACTTGGAGTGAAAACCAATGTGGACCTTAGAAAGCTAATTCTAGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCTTCTGGTTCTAAAGCAGCAACTGCTTTAAGTAAAGTTACAACTCATGCCTCCAAACTGTGA 1353 0.425 MARRLIPLLNRVLGEKIVPPSKINTGILVPEKSSQLKSGKAIAVGSDIHSKDGKVIPVAIMEGDTVLLPEYGATEVKLGNKEEITNTREASNAYDKYNIKSLSGCLNWTSRPNDNSLATCHLLSRHFTSEHNDGCTKEFSRKLLASIPDFVKIVEVGARDGLQNEKAIVPTDVKVELINLLVSTGLSIVEATSFVSPKWVPQLADAKDVLAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAVFPAASESFSKANLNCGIEDNLARCRDITLAARSFSIPVRGYISCVVGCPLEGNIAPAKVAYVAKSLYEMGCSEISLGDTIGVGTPGTVIPMLEAVLDVVPTDKLAVHFHDTYGQALSNILISLQMGINTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLRKLILAGDFICKHLGRASGSKAATALSKVTTHASKL* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1306 450 Pfam HMGL-like 151 423 IPR000891 GO:0003824
Apr4g1306 450 PANTHER HYDROXYMETHYLGLUTARYL-COA LYASE 78 450 IPR043594 GO:0016833
Apr4g1306 450 CDD cpn10 4 82 IPR020818 GO:0005524|GO:0006457|GO:0140662
Apr4g1306 450 Gene3D GroES chaperonin 1 90 IPR037124 GO:0006457
Apr4g1306 450 Pfam Chaperonin 10 Kd subunit 5 82 IPR020818 GO:0005524|GO:0006457|GO:0140662
Apr4g1306 450 ProSiteProfiles Pyruvate carboxyltransferase domain. 151 418 IPR000891 GO:0003824
Apr4g1306 450 SUPERFAMILY GroES-like 4 83 IPR011032 -
Apr4g1306 450 SMART Cpn10_2 4 106 IPR020818 GO:0005524|GO:0006457|GO:0140662
Apr4g1306 450 Gene3D Aldolase class I 144 443 IPR013785 -
Apr4g1306 450 CDD DRE_TIM_HMGL 153 426 - -
Apr4g1306 450 PANTHER HYDROXYMETHYLGLUTARYL-COA LYASE 78 450 - -
Apr4g1306 450 SUPERFAMILY Aldolase 146 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1306 Apr-Chr4 12253262 12265710 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1306 K01640 - gmx:100801507 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1306 4 12253262 12265710 Apr4g1306 4 12253262 12265710 ECH