Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1296 ATGGATCCAGCAGAACTTGCACGAGTTTTTCAAATGTTTGATCGAAATGGGGATGGTCGTATCACGAGAAAAGAGCTTAGTGACTCTCTAAAAAATCTTGGAATAACCATCTCGGAACAAGATTTGATTCAAATGATTGAGAAAATTGACGTAAATGGAGATGGGTATGTTGACATTGATGAGTTTGGTGAGTTATATCAAACGATAATGGATGAGAAAGATGAAGAGGAGGACATGAAGGAGGCATTTAATGTGTTTGATCAAAATGGAGATGGGTTCATCTCAGGAGAGGAATTGAGCGCAGTGTTATCTTCTTTGGGCCTAAAGCATGGGAAAACCTTAGAAGATTGCATAAGCATGATCAAGAAAGTGGACGTGGATGGTGATGGAATGGTTAATTACAAAGAATTTAAGCAAATGATGAAGGCTGGTGGGTTTGCTGCAGCTTCATTGAGTTGA 459 0.3922 MDPAELARVFQMFDRNGDGRITRKELSDSLKNLGITISEQDLIQMIEKIDVNGDGYVDIDEFGELYQTIMDEKDEEEDMKEAFNVFDQNGDGFISGEELSAVLSSLGLKHGKTLEDCISMIKKVDVDGDGMVNYKEFKQMMKAGGFAAASLS* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1296 152 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 151 - -
Apr4g1296 152 SUPERFAMILY EF-hand 5 141 IPR011992 -
Apr4g1296 152 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Apr4g1296 152 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Apr4g1296 152 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Apr4g1296 152 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Apr4g1296 152 Gene3D - 3 66 - -
Apr4g1296 152 Gene3D - 67 146 - -
Apr4g1296 152 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 151 - -
Apr4g1296 152 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Apr4g1296 152 SMART efh_1 5 33 IPR002048 GO:0005509
Apr4g1296 152 SMART efh_1 41 69 IPR002048 GO:0005509
Apr4g1296 152 SMART efh_1 78 106 IPR002048 GO:0005509
Apr4g1296 152 SMART efh_1 116 144 IPR002048 GO:0005509
Apr4g1296 152 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Apr4g1296 152 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Apr4g1296 152 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Apr4g1296 152 CDD EFh 82 142 IPR002048 GO:0005509
Apr4g1296 152 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Apr4g1296 152 PRINTS Parvalbumin signature 65 83 - -
Apr4g1296 152 PRINTS Parvalbumin signature 87 103 - -
Apr4g1296 152 PRINTS Parvalbumin signature 124 137 - -
Apr4g1296 152 CDD EFh 5 62 IPR002048 GO:0005509
Apr4g1296 152 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1296 Apr-Chr4 12080592 12081050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1296 1 148 EF-hand Containing Proteins AT3G07490 79.054 8.97e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1296 K13448 - gmx:100806637 272.707