Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1295 ATGTGGGCTCTTCGTCGAGCTTCGATCCCTCTCAGAGGGTTTAATGTAAGAGCTTCTTGTGTCAAATTAACGCGAACCAGTTGTGTGGAAGAAGAGACTGCTATCTACGAGTCTCCCAGAATAAAGAATGGTGAATTTTTTACCCCAAAGACATATTTCCATTCAGGAAATGCTTCACTGAAATTTACAGTTAGTAGACGGGAACTTTCTTCGAGTAGCACCAAAGAGGAGGATGATTTGGAGGATGGGTTTTCGGAGCTGGAGATGCCTGCCGCTGATGGAAGTGGAAAAGAAAATGATGATTTATTAACTAATGAAACTGACCTATCTGATGGCAGCGACAGTGACGATGTTGAGGAGCCGCACAATGAGATTGATGAATCTGCCAAGAAAAACCGACGACGCAGATGGGCTGAATCGGAACTATTCAAGGAGATCGTGAATGCTCCGGATTTTTCTGTTCACTCAGCTCTGGAAAAGTGGGTAAAAGAAGGGAAGGAACTAAACAGACAGGAAATCTCACTGGCCATGTTTAATCTTAGAAGGCGTAGATTGTTTGTGAAAGCTCTTCAGCTCTCAGAGTGGCTCCAGTCAAAAAAGCAGTTTGAATTTATTGAAAGAGACTATGCATCTCGACTTGATCTAATTGCCAAAGTGCATGGCCTACAGAAGGCAGAGGCTTACATTGAGACTATTCCAGAATCTTGTAGAACAGAGATAATGTACCGAACTTTATTGGCTAACTCTGTTTTTCAGAAGAATACAAAGAAAGCAGAGGAAATTTTCAGTAAAATGAAGGATTTGGGTTTTCCTGTTACAGTATTTCCTTGCAATCAGCTGCTACTTCTGTATAAGAGGGTTGACATGAACAAAATAGCTGATTTGTTATTGTTCATGGAAAATGAGAATATCAAACCTTCTGCACTTACTTTTGAAATCTTAATAGACACGAAAGGCCAGTCAAAAGATATTGCTGGAATGGAGCAAATTGTTGAAAGAATGAAAGCTCAAGGCATTGAACCAAGCGTCAAAACACAGATCGTTGTGTTTAGGCATTACATCTCAGCTGGGCATCAAGATAAAGCTGAAACTTTATTGAAGGAGATGGAGGGTAAAAACTTGATACAGAATAGGTGGCTATGCCGAATTTTGCCTCCCTTCTATGCAAACCTAGGAAAGGAGGATGAAGTGAGAAGAATTTGGGAAGTCTGTGAGGCAAACCCACGGGTTGATGAGTGTGTTGCTGTAATTGAAGCTTGGGGAAAGTTGAATAAAATCAATGAAGCAGAGAAAGTTTTTGAGATAATGTTAAAGAAATCAAAGCTTTCTTCAAGGAACTGCTCTGTGCTACTGTATGTTTATGCAAATAATAAGATGCTAGTGAAGGGTAAGGATCTTATTAAGCGAATGGCAGAGAGTGGGCAGCGAATTGGCCCATTGACGTTGGATGCCATAGTGAAACTTTATGTCCAATCTGGGGAAGTGGAGAAGGCAGATTCTATTCTTCACAAGGCAGCCCAGCTGAACCCGGTAAGGCCATTATATTCTACCTTCCTAACTATGTTGGAACAGTATGCTAAGAGGGGTGACATACACAATTCGGAAAAGATTTTCGTTAGAATGAAACAAGCTAAATATCAACCTGGATCGAAGATATACCAAATCCTAATGCAGGCTTATATTAATGCAAAGCTTCCAGCCTATGGGATTAGGGACAGGATTAAAGCTGATAACATAAATCCCAACAAAGCTTTGGCTAGCCAGTTGGTTCAAGTTGATGGATTTAGGAAGAATCCAGTTTCCGATTTGCTTGATTGA 1818 0.407 MWALRRASIPLRGFNVRASCVKLTRTSCVEEETAIYESPRIKNGEFFTPKTYFHSGNASLKFTVSRRELSSSSTKEEDDLEDGFSELEMPAADGSGKENDDLLTNETDLSDGSDSDDVEEPHNEIDESAKKNRRRRWAESELFKEIVNAPDFSVHSALEKWVKEGKELNRQEISLAMFNLRRRRLFVKALQLSEWLQSKKQFEFIERDYASRLDLIAKVHGLQKAEAYIETIPESCRTEIMYRTLLANSVFQKNTKKAEEIFSKMKDLGFPVTVFPCNQLLLLYKRVDMNKIADLLLFMENENIKPSALTFEILIDTKGQSKDIAGMEQIVERMKAQGIEPSVKTQIVVFRHYISAGHQDKAETLLKEMEGKNLIQNRWLCRILPPFYANLGKEDEVRRIWEVCEANPRVDECVAVIEAWGKLNKINEAEKVFEIMLKKSKLSSRNCSVLLYVYANNKMLVKGKDLIKRMAESGQRIGPLTLDAIVKLYVQSGEVEKADSILHKAAQLNPVRPLYSTFLTMLEQYAKRGDIHNSEKIFVRMKQAKYQPGSKIYQILMQAYINAKLPAYGIRDRIKADNINPNKALASQLVQVDGFRKNPVSDLLD* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1295 605 PANTHER OS12G0527900 PROTEIN 27 605 - -
Apr4g1295 605 Pfam PPR repeat 415 439 IPR002885 -
Apr4g1295 605 Pfam PPR repeat 448 474 IPR002885 -
Apr4g1295 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Apr4g1295 605 MobiDBLite consensus disorder prediction 105 122 - -
Apr4g1295 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Apr4g1295 605 PANTHER OS01G0280400 PROTEIN 27 605 - -
Apr4g1295 605 Gene3D Tetratricopeptide repeat domain 481 603 IPR011990 GO:0005515
Apr4g1295 605 MobiDBLite consensus disorder prediction 87 131 - -
Apr4g1295 605 Pfam Pentatricopeptide repeat domain 264 319 IPR002885 -
Apr4g1295 605 Pfam Pentatricopeptide repeat domain 330 372 IPR002885 -
Apr4g1295 605 Pfam Pentatricopeptide repeat domain 511 561 IPR002885 -
Apr4g1295 605 Gene3D Tetratricopeptide repeat domain 238 413 IPR011990 GO:0005515
Apr4g1295 605 SUPERFAMILY HCP-like 420 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1295 Apr-Chr4 12071926 12077840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1295 146 544 EF-hand Containing Proteins AT1G02150 25.000 1.09e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1295 - - gmx:100500196 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1295 4 12071926 12077840 Apr8g1854 8 28993684 28994094 ECH
Apr4g1295 4 12071926 12077840 Apr4g1295 4 12071926 12077840 ECH