Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1293 ATGGCACCTATCCTTCTAACTCGTCCTCCTCTGCTTCGCTTCATGGCCTCTCGCTTCTTCACCGTCTCTTCCTTTCACCCTCATTCCTCTTCTCTTCTTTCCACCCTCTCCAAACCCAGGATAAGTTTTCCTCTCGGAAAATTGTGGATTCCACGTTCGGTACATAATGCAGTCACTCCGAGGGCGTTTATGTCTTCTGTCTCGACAACTGAAGCTTTTCAGAAAAATGAAAGTTCCAAAGCTTATGGTTCTGATCAAATTCAGGTGCTTGAAGGATTGGACCCCGTAAGAAAAAGGCCTGGGATGTATATTGGAAGCACTGGCCCACGTGGGTTGCACCATTTGGTGTATGAAATTTTGGATAATGCTGTTGACGAAGCTCAAGCTGGATTTGCTTCCAAGATAGATGTTATTTTACTTGCAGATGATTCTGTGAGCATCACGGACAATGGTCGTGGGATTCCTACTGACTTGCATCCAGTTACAAATAAATCTGCCTTGGAGACAGTGTTGACGGTCTTGCATGCCGGTGGAAAATTTGGTGGTGCCAATAGTGGTTACTCTGTTTCAGGTGGTTTACACGGCGTTGGTTTGTCTGTTGTTAATGCATTGTCTGAGTCATTAGAGGTAACAGTTTGGCGTGATGGAATGGAATACATGCAAACATATTCTTGCGGAAAGCCAGTGACAATTCTGAAATGCCTTGTGCTTCCAGATGAAAAGAAAGATCTTCAAGGGACACGTATCAGATTTTGGCCAGACAAAGAAGTATTCACCACTGCTATTCAGTTTGATTACAATACAATAGCTGGACGCATTAGGGAGTTAGCTTTCCTCAACCCAAAGCTTACTATCACACTTCGGAAAGAGGACAATGATCCAGAAAAAGTTCAATATAATGAATATTTCTATGCTGGGGGATTGGTTGAATATGTGAAATGGCTTAACACTGATAAGAAAGCTCTGCATGATGTACTGAGTTTTAGAAAAGAAACAGATGGCATCACAATTGATATAGCTTTTCAGTGGTGTGAAGATGCATATTCAGATACAATACTGGGATATGCTAATAGCATACGCACTATTGATGGTGGCACTCATATTGATGGTATGAAGGCTTCTATAACAAGAACATTGAATAGTCTTGGAAAGAAGTCCAAAGTTATCAAGGATAAGGATATTACTCTAAGTGGTGAGCATGTAAGAGAGGGTCTAACATGTGTTGTCTCAGTCAAGGTCCCAAATCCAGAGTTTGAAGGACAAACAAAGACAAGGTTAGGAAATCCAGAGGTGCGAAAAGTGGTTGATCAATCTATTCAAGACTACCTTACTGAGTATTTGGAATTGCATCCAGATGTTCTTGATTCTGTACTTTCTAAAGCTCTTAATGCTTTCAAGGCAGCTTTGGCAGCAAAAAGAGCAAGGGAATTGGTGAGACAAAAGAGTGTATTGAGATCTTCATCTCTTCCAGGAAAACTAGCTGATTGTTCGTCCACAAATCCTGAAGATTGTGAAATCTTTATTGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGGCGTGACAGGCGCTTTCAGGTAAAGTGTATACTTTTGCATCAAAGCCTACAGCAGGCCATTCTCCCTTTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATTCTTGGTCTTGGTCTTGGAGTGAAGGGAGAGGATTTTAAAAAGGATGCCCTCCGATATCATAAGATTATTATTTTGACTGATGCTGATGTGGATGGTGCGCACATCCGAACTCTGCTACTGACCTTTTTCTTTAGATATCAGAGAGCTTTGTTTGATGAAGGTTGCATATATGTTGGTGTTCCACCACTGTACAAGGTTGTGAGGGGAAAACAAGTGCACTATTGCTATGATGATGCTGACCTTAAAAAGCTTCGAAGCTCATTCCCTCCTAATGCATCATACAACATGCAAAGGTTCAAAGGGTTGGGAGAGATGATGCCCTTACAACTATGGGAAACAACCATGGATCCAGAACGCAGGTTATTGAAGCAATTAAAAGTTGAGGATGCAGCAGAAGCAAATATTGTTTTTTCCTCTCTTATGGGTGCTCGGGTGGATGTTCGGAAGGAGCTGATACGAAATTCTGCAAACATGATTGATCTTGATCAGCTAGATATTTGA 2208 0.4149 MAPILLTRPPLLRFMASRFFTVSSFHPHSSSLLSTLSKPRISFPLGKLWIPRSVHNAVTPRAFMSSVSTTEAFQKNESSKAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVILLADDSVSITDNGRGIPTDLHPVTNKSALETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYMQTYSCGKPVTILKCLVLPDEKKDLQGTRIRFWPDKEVFTTAIQFDYNTIAGRIRELAFLNPKLTITLRKEDNDPEKVQYNEYFYAGGLVEYVKWLNTDKKALHDVLSFRKETDGITIDIAFQWCEDAYSDTILGYANSIRTIDGGTHIDGMKASITRTLNSLGKKSKVIKDKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQDYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSTNPEDCEIFIVEGDSAGGSAKQGRDRRFQVKCILLHQSLQQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVVRGKQVHYCYDDADLKKLRSSFPPNASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSSLMGARVDVRKELIRNSANMIDLDQLDI* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1293 735 Gene3D - 78 305 IPR036890 -
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 82 92 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 263 278 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 278 291 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 306 328 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 398 414 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 446 460 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 460 480 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 568 577 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 686 698 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 PRINTS DNA gyrase subunit B signature 702 718 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 CDD HATPase_GyrB-like 112 297 - -
Apr4g1293 735 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 38 735 - -
Apr4g1293 735 PANTHER DNA GYRASE SUBUNIT B 38 735 - -
Apr4g1293 735 Gene3D - 485 735 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 ProSitePatterns DNA topoisomerase II signature. 508 516 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 82 296 IPR036890 -
Apr4g1293 735 CDD TopoII_Trans_DNA_gyrase 306 460 - -
Apr4g1293 735 SUPERFAMILY Ribosomal protein S5 domain 2-like 307 477 IPR020568 -
Apr4g1293 735 CDD TOPRIM_TopoIIA_GyrB 504 630 IPR034160 -
Apr4g1293 735 SMART HKATPase_4 107 257 IPR003594 -
Apr4g1293 735 SMART topII5 111 726 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 TIGRFAM gyrB: DNA gyrase, B subunit 82 734 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Apr4g1293 735 Pfam Toprim domain 505 618 IPR006171 -
Apr4g1293 735 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 109 256 IPR003594 -
Apr4g1293 735 Pfam DNA gyrase B 307 476 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 Pfam DNA gyrase B subunit, carboxyl terminus 661 721 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Apr4g1293 735 SUPERFAMILY Type II DNA topoisomerase 481 728 IPR013760 GO:0003918|GO:0005524
Apr4g1293 735 Gene3D - 306 484 IPR014721 -
Apr4g1293 735 PRINTS DNA topoisomerase II family signature 111 126 - -
Apr4g1293 735 PRINTS DNA topoisomerase II family signature 146 159 - -
Apr4g1293 735 PRINTS DNA topoisomerase II family signature 191 205 - -
Apr4g1293 735 PRINTS DNA topoisomerase II family signature 354 367 - -
Apr4g1293 735 PRINTS DNA topoisomerase II family signature 506 520 - -
Apr4g1293 735 PRINTS DNA topoisomerase II family signature 585 601 - -
Apr4g1293 735 PRINTS DNA topoisomerase II family signature 603 620 - -
Apr4g1293 735 PRINTS DNA topoisomerase II family signature 623 635 - -
Apr4g1293 735 PRINTS DNA topoisomerase II family signature 665 681 - -
Apr4g1293 735 ProSiteProfiles Toprim domain profile. 504 623 IPR006171 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1293 K02470 - gmx:100807172 1278.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1293 4 12046131 12060609 Apr4g1293 4 12046131 12060609 ECH