Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1287 ATGGCGTTGCACTCTGTGTCTTCCGTTTCTCAAGTGCTCCGTCTCTCCGAGCCATTCCCTTCCATCCATAGCTCTCACTTGCTTGTTCACTTCGCTCCTCTCCGCCGCAAACCTAAGCGTCGCAACCGTAGATTGACGGCGTTTCCCTCTCCCTCTTCCCTTCCTCATTCATCCGTCCAAGCCGTTCTTCACCACAATAACCGTCTCCATCATTCGCATGTGTCTCCTTCTTCCGATTCCAAGTCTCAGTCACTTGTTGGTCAGGTTGCAAACTTGGAGGACATTATATCAGAAAGAGGGGCCTGTGGTGTTGGATTCATTGCCAATTTAGAAAATAAGGCATCACATGAGATTGTTAAGGATGCTTTAAATGCTTTAAGTTGTATGGAACATCGTGGTGGCTGTGGAGCCGATAATGACTCTGGTGATGGTTCTGGACTGATGACTGCAGTTCCATGGGATCTATTTGACAATTGGGCCAACAAACAAGGGATTGCTTCCTTTGATAAGTTGCACACTGGTGTTGGAATGGTTTTCTTACCCAACGATGCACAACTTCTCAATGAAGCAAAGAAAGTGATTGTAAATACTTTTCGGCAAGAAGGTCTTGAAGTTCTTGGTTGGAGGCCTGTCCCTGTAAATACTTCTGTAGTAGGTTATTATGCCAAGGAGACCATGCCTAATATACAACAGGTATTTGTTAAGATTGTGAAAGAAGAAAATGTTGATGACATTGAACGAGAACTGTACATCTGCCGGAAATTGATTGAAAAAGCAGTAAGCTCAGAAAGTTGGGGAAATGAGCTTTATTTCTGTTCTTTATCCAATCAAACCATAGTATACAAGGGGATGCTTCGCTCAGAAGTGCTTGGGTTATTTTATTCTGACCTTCAGAATGATATTTATAAGTCCCCATTTGCCATTTATCATCGAAGGTACAGCACAAATACTAGTCCCAGATGGCCTCTTGCACAACCAATGAGGCTTCTTGGTCATAATGGAGAGATTAACACCATACAGGGGAACTTGAATTGGATGCAATCACGAGAACCATCATTAAGGTCATCTGTATGGCGAGGTCGTGAAAATGAAATTCGACCATATGGAAATCCAAAGGCATCAGACTCGGCAAATCTTGACAGTACTGCAGAATTATTGATAAGAAGTGGTCGCAGTCCTGAGGAAGCTATGATGATTCTTGTTCCAGAGGCTTACAAAAATCATCCAACTCTGACAATCAAATATCCTGAGGCGGTTGACTTCTATGATTACTACAAGGGTCAGATGGAAGCTTGGGATGGACCAGCCTTGCTTTTGTTCAGTGATGGGAAAACTGTTGGTGCATGCCTTGACCGTAATGGACTTCGACCTGCTAGATATTGGCGAACATCGGACAATATGGTCTATGTTGCCTCTGAGGTTGGTGTTGTTCCGGTAGATGAGTCAAAGGTTATCTTGAAAGGCCGATTAGGTCCAGGCATGATGATAACGGTTGATTTACCTGGCGGTCAGGTCTTTGAGAATACAGAGGTTAAAAAACGAGTAGCCTTATCAAACCCATATGGGAATTGGGTCAAGGAAAATCTGCGGTCTTTGACACCTGGGAACTTCCTTTCAGCCTCTGTGATGGACAATGATGCAGTATTAAGACAACAACAGGCATTTGGGTACTCCAGTGAAGATGTCCAAATGGTGATTGAGACTATGGCTTCTCAAGGAAAGGAGCCCACATTTTGCATGGGAGATGATATTCCATTGGCAGCGTTGTCTCAAAAACCTCACATGCTTTTTGATTATTTTAAGCAACGATTTGCACAGGTTACAAATCCTGCAATTGATCCTCTTCGAGAAGGATTGGTTATGTCTCTAGAAGTGAATATAGGGAAGCGAGGGAATATACTGGAAATTGGACCAGACAATGCTTCGCAGGTTATATTATCCAGTCCAGTATTGAATGAAGGGGATCTTGAGTCATTACTAAAAGACTCCCACTTAAAATCTCAAGTATTACCCACATTTTTTGACATAACTAAGGGCATTGATGGTTCCCTCGAGAAAGCATTAAATAAGCTTTGTGAAGCTGCAGATGAAGCTGTTAGAAATGGTTCCCAGCTTCTTATTCTCTCAGACCGTTCAGAAGCACTGGAACCAACTCATCCTTCAATCCCAATACTTCTTGCTGTTGGTACAGTTCATCAGCATCTAATCCAGAATGGCCTGCGGACGTCAGCTTCAATTATAGCAGATACTGCTCAGTGCTTTAGCACTCACCAGTTTGCCTGTTTAATAGGATATGGTGCAAGTGCTGTGTGTCCATACTTGGCACTCGAGACATGTCGGCAGTGGCGTTTGAGTAATAAAACTGTAAATATGATGAGGAATGGAAAGATGCCTACTGTGTCGATTGAACAGGCACAAAAGAACTATTGCAAGGCTGTAAAAGCAGGTCTTCTTAAAATTCTGTCCAAAATGGGCATTTCATTGCTTTCGAGTTACTGTGGTGCACAGATATTTGAAGTCTATGGATTAGGGCAGGAAGTTGTTGACCTTGCATTCAGAGGAAGTGTATCAAAAATTGGTGGATTAACTTTTGATGAGGTGGCAAGAGAGACTTTGTCTTTCTGGGTGAAGGCATTCTCTGAAGATACGGCTAAAAGGTTGGAAAATTTTGGATTTATACAGTTCAGACCTGGAGGGGAGTATCATGCAAATAACCCAGAGATGTCAAAGTTGCTGCACAAAGCTGTTCGTCAAAAAAGTCAAAGTGCCTTTTCAGTTTATCAGCAGTATTTGGCTAATCGACCTGTGAATGTTCTTCGTGACCTCCTTGAATTCAAAAGTAATCGTGCTCCAATACCTGTGGGGAAGGTTGAACCTGCTTCATCTATTGTGCAACGGTTTTGTACAGGGGGCATGTCACTTGGAGCTATTTCAAGAGAAACCCATGAAGCAATTGCAATTGCAATGAATAGATTAGGTGGAAAATCAAATTCTGGGGAAGGTGGTGAGGATCCCATTCGCTGGAAACCACTTACAGATGTTGTAGATGGTTATTCTCCAACTCTTCCACACCTTAAAGGTCTTCAAAATGGTGATACTGCTACTAGTGCCATCAAGCAGGTTGCTTCAGGAAGGTTTGGCGTCACCCCAACATTCTTGGCAAATGCTGATCAGTTAGAAATCAAAATTGCACAAGGTGCAAAACCTGGTGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTATATAGCAAGGTTGAGAAATTCAAAACCAGGAGTTCCTCTTATATCTCCGCCACCTCATCATGACATTTATTCTATTGAGGACCTTGCTCAATTAATCTTTGATCTTCATCAGGTGAACCCTAAGGCCAAGGTGTCAGTAAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGGGTTGCAAAGGGCAATGCCGACATTATACAGATTTCAGGACATGATGGGGGTACAGGAGCAAGCCCTATAAGTTCCATCAAACATGCAGGAGGTCCTTGGGAACTTGGGCTTACAGAATCTCACCAGACACTTATTGAAAATGGACTTAGAGAAAGGGTTATTCTCAGAGTTGATGGTGGATTTAGAAGTGGAGTTGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATATGGGTTTGGTTCAGTAGCGATGATTGCTACTGGATGTGTTATGGCCCGCATTTGCCACACCAATAATTGCCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGCTGCGTGCCCGCTTTCCGGGTGTTCCTGGTGATCTTGTCAACTACTTTTTGTATGTAGCTGAAGAGGTGAGGGGCATATTGGCCCAGCTGGGGTATGAAAAGTTGGATGATGTAATTGGCCGGACAGATTTGTTGCAACCAAGAGACATATCTCTTGCAAAAACTCAGCATCTAGATCTGAATTATGTCCTCTCGAGTGTTGGGTTACCTAAATGGAGCAGTACCGAAATCAGGAATCAGGACCCTCATACCAATGGTCCTGTTCTTGATGATGTTTTGCTAGCAGACCCAGAGATTGCAGATGCCATTGAAAATGAAAAGGTGGTTAGTAAGACCATAAAAATATACAACATTGATCGAGCTGTTTGTGGACGTGTAGCTGGTGTCATTGCAAAGAAGTATGGTGACACTGGTTTTGCTGGACAGTTGAATATAACATTTACAGGAAGTGCCGGGCAGTCATTTGCATGTTTTCTGACGCCTGGAATGAACATTCGCCTGATAGGAGAGGCTAATGATTATGTTGGGAAGGGCATTGCTGGAGGTGAGTTGGTTATCACCCCAGTTGACAAGACTGGATTTGAACCTGAGGATGCAACTATTGTAGGGAACACTTGCTTGTATGGGGCAACTGGTGGACAGGTCTTTGTTAGGGGGAGAGCTGGTGAAAGATTTGCTGTCAGAAACTCACTTACTGAAGCTGTGGTTGAAGGCACAGGAGATCATTGTTGTGAGTACATGACGGGTGGATGTGTGGTTGTCTTGGGAAAAGTGGGTAGAAATGTAGCTGCTGGAATGACAGGAGGATTGGCTTACATTCTTGATGAGGATAATACTCTAATACCAAAGGTAAACCGAGAAATTGTAAAAATCCAACGGGTGTCAGCACCTGTTGGGCAGATGCAGCTGAAGAACCTTATTGAAGCTCATGTTGAAAAAACTGGTAGCAACAAAGGTGCGGCTATTCTGAAGGACTGGGATAAGTATTTATCATTATTTTGGCAGCTAGTTCCACCTAGTGAAGAAGATACCCCTGAAGCTAGCGCCAAGTATGACACGACTACAGCAGAGCAGGAAGAGGTTAGCAACACGTCTTCTGATTAG 4866 0.4349 MALHSVSSVSQVLRLSEPFPSIHSSHLLVHFAPLRRKPKRRNRRLTAFPSPSSLPHSSVQAVLHHNNRLHHSHVSPSSDSKSQSLVGQVANLEDIISERGACGVGFIANLENKASHEIVKDALNALSCMEHRGGCGADNDSGDGSGLMTAVPWDLFDNWANKQGIASFDKLHTGVGMVFLPNDAQLLNEAKKVIVNTFRQEGLEVLGWRPVPVNTSVVGYYAKETMPNIQQVFVKIVKEENVDDIERELYICRKLIEKAVSSESWGNELYFCSLSNQTIVYKGMLRSEVLGLFYSDLQNDIYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLRSSVWRGRENEIRPYGNPKASDSANLDSTAELLIRSGRSPEEAMMILVPEAYKNHPTLTIKYPEAVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNMVYVASEVGVVPVDESKVILKGRLGPGMMITVDLPGGQVFENTEVKKRVALSNPYGNWVKENLRSLTPGNFLSASVMDNDAVLRQQQAFGYSSEDVQMVIETMASQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRGNILEIGPDNASQVILSSPVLNEGDLESLLKDSHLKSQVLPTFFDITKGIDGSLEKALNKLCEAADEAVRNGSQLLILSDRSEALEPTHPSIPILLAVGTVHQHLIQNGLRTSASIIADTAQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSNKTVNMMRNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGQEVVDLAFRGSVSKIGGLTFDEVARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEYHANNPEMSKLLHKAVRQKSQSAFSVYQQYLANRPVNVLRDLLEFKSNRAPIPVGKVEPASSIVQRFCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPIRWKPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLIENGLRERVILRVDGGFRSGVDVMMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGILAQLGYEKLDDVIGRTDLLQPRDISLAKTQHLDLNYVLSSVGLPKWSSTEIRNQDPHTNGPVLDDVLLADPEIADAIENEKVVSKTIKIYNIDRAVCGRVAGVIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRLIGEANDYVGKGIAGGELVITPVDKTGFEPEDATIVGNTCLYGATGGQVFVRGRAGERFAVRNSLTEAVVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYILDEDNTLIPKVNREIVKIQRVSAPVGQMQLKNLIEAHVEKTGSNKGAAILKDWDKYLSLFWQLVPPSEEDTPEASAKYDTTTAEQEEVSNTSSD* 1622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1287 1621 Gene3D Aldolase class I 576 1302 IPR013785 -
Apr4g1287 1621 MobiDBLite consensus disorder prediction 1594 1621 - -
Apr4g1287 1621 MobiDBLite consensus disorder prediction 1603 1621 - -
Apr4g1287 1621 Gene3D Aldolase class I 528 894 IPR013785 -
Apr4g1287 1621 CDD gltB_C 1343 1593 IPR002489 GO:0016491
Apr4g1287 1621 PANTHER FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 2, CHLOROPLASTIC 41 1618 - -
Apr4g1287 1621 Pfam GXGXG motif 1368 1550 IPR002489 GO:0016491
Apr4g1287 1621 SUPERFAMILY FMN-linked oxidoreductases 545 1324 - -
Apr4g1287 1621 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 102 501 IPR017932 -
Apr4g1287 1621 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1336 1599 IPR036485 GO:0016491
Apr4g1287 1621 CDD GltS_FMN 905 1300 IPR002932 GO:0006537|GO:0015930|GO:0016638
Apr4g1287 1621 Gene3D - 1324 1599 IPR036485 GO:0016491
Apr4g1287 1621 CDD GltS 102 519 - -
Apr4g1287 1621 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 102 528 IPR029055 -
Apr4g1287 1621 Pfam Glutamine amidotransferases class-II 102 524 IPR017932 -
Apr4g1287 1621 Pfam Glutamate synthase central domain 551 843 IPR006982 GO:0006807|GO:0015930
Apr4g1287 1621 Pfam Conserved region in glutamate synthase 902 1286 IPR002932 GO:0006537|GO:0015930|GO:0016638
Apr4g1287 1621 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 102 638 IPR029055 -
Apr4g1287 1621 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 41 1618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1287 Apr-Chr4 11920385 11948002 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1287 K00284 - gmx:548016 3039.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1287 4 11920385 11948002 Apr4g1287 4 11920385 11948002 ECH