Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1280 ATGGAAGAGAATGAGCACGGGAGTGAGGAGAGGGAGAGAGTGTGTTTGAGCATGCAAAAGGACAATGGAACAACAGAGAGTCACAGATACTATCTCTCGCGCAGAACAACGCTTGAGATGCTAAGAGACAGAGGCTATTCCATTCCATCCTCAGAAATCGACCTTTCCCTCTCTCAATTCCGAGCCACACACGACCTTTCCCCCAACCTCGACCGCCTCCGCTTCTCCGCCACTCACGCCTCCAACCCTTCCAAAAGGGTTTTGGTCATTTTCTGTGCCTCTTCCGTTGTCAAAGTCACAAACGTTCGGTACATTACGGCCCAGATTGTAAATAAAGACACCTTGACTGGCCTCATTTTGATCGTCCACAGTCATATTACTAGCCAGGCCTCCAAAGCCCTCAATCTTCTCTCCTTCAAGGTTGAAGTTTTCCAGATCACAGATTTGCTTGTTAATATTACAAAGCATGTATTGAAGCCAAAGCATCAGGTGCTGACTGATCGGCAGAAGCAAAATCTCCTGAAGAAGTACAATATTGAAGAAAAGCAGCTTCCCCGGATGCTACAGACAGACGCAATTGCACGATATTATGGTCTTGAGAGGGGACAAGTAATTAAAGTTACCTATAGTGGTGAAATCACCCAGATGCATGTCACATATCGATGCGTCTGGTGA 675 0.4652 MEENEHGSEERERVCLSMQKDNGTTESHRYYLSRRTTLEMLRDRGYSIPSSEIDLSLSQFRATHDLSPNLDRLRFSATHASNPSKRVLVIFCASSVVKVTNVRYITAQIVNKDTLTGLILIVHSHITSQASKALNLLSFKVEVFQITDLLVNITKHVLKPKHQVLTDRQKQNLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVIKVTYSGEITQMHVTYRCVW* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1280 224 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 5 224 IPR014381 -
Apr4g1280 224 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 25 152 IPR036710 GO:0003677|GO:0003899|GO:0006351
Apr4g1280 224 Gene3D - 20 148 IPR036710 GO:0003677|GO:0003899|GO:0006351
Apr4g1280 224 Pfam RNA polymerase Rpb5, C-terminal domain 151 223 IPR000783 GO:0003677|GO:0003899|GO:0006351
Apr4g1280 224 SUPERFAMILY RPB5-like RNA polymerase subunit 149 224 IPR035913 -
Apr4g1280 224 Gene3D - 149 224 IPR035913 -
Apr4g1280 224 Pfam RNA polymerase Rpb5, N-terminal domain 25 108 IPR005571 GO:0003677|GO:0003899|GO:0006351
Apr4g1280 224 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 5 224 - -
Apr4g1280 224 PIRSF RPB5 18 224 IPR014381 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1280 Apr-Chr4 11802837 11805064 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1280 K03013 - gmx:100306033 343.584