Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1277 ATGTTTTCTTCTTCAATCACTCTCAAGCCCTTTCTTCAATCCCTTGTCCTTGATCATTACTCTCAGAACACAACTGCTGCAAATAGGTGGGAGTGTTTAGGGTTTTACAATTCAGCAAATTTCCGGACCAAGAGACTGTTGTGTGCTAATGGGTTCAAGCTGAATTGTTTGGTTGATAGAGAGATGGATGTGGGTTCACCATCTTTGGTGGATGATGCTGCAAGGTGCTTAAGTGAAGAAGAGATAAGGGAACCTAGTATTTCGACAATGGTGATGAATTTTGAGGATAAGTTTGATCCTTATGGAGCAGTTAGTCTCCCACTTTACCAAACTGCTACTTTTAAGCAGCCTTCTGCAGTAGAAAATGGTCCCTATGACTATACTAGAAGTGGAAATCCTACTCGAGATGCTTTAGAAAGCTTACTGGCAAAACTTGATAAAGCAGATAGAGCCCTGTGCTTCACCAGTGGAATGGCTGCTTTGACTGCTGTTGCTCATCTTGTTGGAACTGGTGAGGAAATTGTTGCTGGAGATGATATTTATGGTGGCTCAGATAGGCTGCTGTCTCAAGTAGTTCCAAGGACTGGAGTTGTGGTGAAGCGGGTAAATACAAGTGATCTAAATGAGGTTGCATCAGCTATTGGACCCAGGACTAAGCTTGTGTGGCTTGAGAGTCCAACCAATCCTCGGCTACAAATATCTGATATTCAAAAAATAGCAGAGATGGCTCATTCACATGATGCTCTTGTGTTAGTGGACAATAGCATAATGTCACCTGTGTTGTCTCAGCCATTGGAACTTGGAGCAGATATTGTCATGCACTCAGCTACCAAATTCATTGCTGGACATAGTGATATTATGGCTGGTGTGCTTGCTGTGAAAAGTGAAAGGTTGGGAAAGGAACTGTATTTCTTGCAAAATGCAGAGGGTTCAGGCTTAGCTCCATTTGAGTGTTGGCTTTGTTTGCGTGGAATCAAGACAATGGCCCTGCGAATTGAAAAGCAACAGGATAATGCACAGAAGATTGCTGAGTTCCTTGCTTCCCATCCTCAAGTTAAGCAAGTGAATTATGCTGGCTTGCCCAATCATCCTGGACGTGATTTACACTATTCTCAGGCAAAGGGTGCAGGGTCTGTGCTTAGCTTCTTAACAGGTTCCCTCGCACTTTCAAAGCATATTGTTGAAACTACCAAATACTTCAGCATAACCGTTAGCTTTGGGAGTGTGAAGTCTCTAATAAGCATGCCATGTTTTATGTCCCATGCAAGCATACCTGCGGCAGTTCGTGAGGACAGAGGATTAACTGAAGATCTTGTACGTATATCTGTGGGAATTGAGGATGTGAATGATCTCATCGCTGATCTAGACAATGCACTTAGAACTGGCCCTCTCTAA 1395 0.4315 MFSSSITLKPFLQSLVLDHYSQNTTAANRWECLGFYNSANFRTKRLLCANGFKLNCLVDREMDVGSPSLVDDAARCLSEEEIREPSISTMVMNFEDKFDPYGAVSLPLYQTATFKQPSAVENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALTAVAHLVGTGEEIVAGDDIYGGSDRLLSQVVPRTGVVVKRVNTSDLNEVASAIGPRTKLVWLESPTNPRLQISDIQKIAEMAHSHDALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDIMAGVLAVKSERLGKELYFLQNAEGSGLAPFECWLCLRGIKTMALRIEKQQDNAQKIAEFLASHPQVKQVNYAGLPNHPGRDLHYSQAKGAGSVLSFLTGSLALSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREDRGLTEDLVRISVGIEDVNDLIADLDNALRTGPL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1277 464 SUPERFAMILY PLP-dependent transferases 95 460 IPR015424 -
Apr4g1277 464 Pfam Cys/Met metabolism PLP-dependent enzyme 89 459 IPR000277 GO:0019346|GO:0030170
Apr4g1277 464 Gene3D Aspartate Aminotransferase, domain 1 329 462 IPR015422 GO:0003824
Apr4g1277 464 PANTHER BNAC04G24570D PROTEIN 29 464 - -
Apr4g1277 464 CDD CGS_like 102 460 IPR000277 GO:0019346|GO:0030170
Apr4g1277 464 ProSitePatterns Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 270 284 IPR000277 GO:0019346|GO:0030170
Apr4g1277 464 PIRSF CGS 77 462 IPR000277 GO:0019346|GO:0030170
Apr4g1277 464 Gene3D - 86 328 IPR015421 GO:0003824
Apr4g1277 464 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 29 464 IPR000277 GO:0019346|GO:0030170
Apr4g1277 464 TIGRFAM cysta_beta_ly_E: cystathionine beta-lyase 88 461 IPR006238 GO:0004121|GO:0071266
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1277 Apr-Chr4 11766591 11773604 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1277 K01760 - gmx:100812354 801.586