Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1269 ATGAAGCTCATCAACATCAACCCCAAAAACCTCAAACTCTCCCCCAAACACCTCTTCCGCTCCAAAAAGCAGCGCTCTTTAGTCTCTAGATCCGACCCGCTTTCATTCGGATCTGGATCCTCTTCTTCCTCTTCCGACGACTCCACGCATAAGACCCCCAACGCTGCTGCTCCCGCCGGCTCCCAAACCCCCACCAGCGTCCTTCCCGACGTCACCGTCGACTGGTCCGACATCACCGTCGACGTCCGGTGGGACCTCGCCCAGGCCTTTCGCCTCATCGACCGCGATAACGACGGCGTCGTTTCGCGGGAGGAGCTCGAGGCTCTCCTCACTAATCTCGCCGCGTCGTCTAGTCCGGACGACGTGGCGTTGATGCTCAGCGAGGTCGATGGTGATGGCCACGGGTGTATCAGTGTGGAAGCGCTAATGAACCGGGTCGGGACGGGTTCGGAGCCCGGTTCGGACCCTGGGGAACTGAGAGAGGCGTTTGAGGTTTTTGACACGGATCGTGATGGGAGGATCTCTGCGGAGGAGTTGCTTAGGGTTTTCAGAGCGATTGGGGACGAGCGGTGCACGTTAGAGGAGTGCCGGCGCATGATAGAAGGTGTGGATAGGAACGGGGATGGGTTCGTGTGCTTCGAGGACTTTTCGCGTATGATGGAGTTGCAGCGATGA 675 0.5881 MKLININPKNLKLSPKHLFRSKKQRSLVSRSDPLSFGSGSSSSSSDDSTHKTPNAAAPAGSQTPTSVLPDVTVDWSDITVDVRWDLAQAFRLIDRDNDGVVSREELEALLTNLAASSSPDDVALMLSEVDGDGHGCISVEALMNRVGTGSEPGSDPGELREAFEVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSRMMELQR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1269 224 ProSiteProfiles EF-hand calcium-binding domain profile. 85 116 IPR002048 GO:0005509
Apr4g1269 224 ProSitePatterns EF-hand calcium-binding domain. 167 179 IPR018247 -
Apr4g1269 224 MobiDBLite consensus disorder prediction 21 68 - -
Apr4g1269 224 ProSiteProfiles EF-hand calcium-binding domain profile. 191 224 IPR002048 GO:0005509
Apr4g1269 224 Pfam EF-hand domain pair 159 220 IPR002048 GO:0005509
Apr4g1269 224 Pfam EF-hand domain pair 86 140 IPR002048 GO:0005509
Apr4g1269 224 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 9 222 - -
Apr4g1269 224 CDD EFh 158 220 IPR002048 GO:0005509
Apr4g1269 224 ProSiteProfiles EF-hand calcium-binding domain profile. 154 189 IPR002048 GO:0005509
Apr4g1269 224 SMART efh_1 121 149 IPR002048 GO:0005509
Apr4g1269 224 SMART efh_1 195 223 IPR002048 GO:0005509
Apr4g1269 224 SMART efh_1 158 186 IPR002048 GO:0005509
Apr4g1269 224 SMART efh_1 85 113 IPR002048 GO:0005509
Apr4g1269 224 SUPERFAMILY EF-hand 73 220 IPR011992 -
Apr4g1269 224 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Apr4g1269 224 Gene3D - 150 224 - -
Apr4g1269 224 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 222 - -
Apr4g1269 224 MobiDBLite consensus disorder prediction 28 68 - -
Apr4g1269 224 ProSitePatterns EF-hand calcium-binding domain. 204 216 IPR018247 -
Apr4g1269 224 Gene3D - 83 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1269 Apr-Chr4 11565443 11566898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1269 9 224 EF-hand Containing Proteins AT3G10190 51.152 1.98e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1269 K13448 - gmx:100815559 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1269 4 11565443 11566898 Apr4g1269 4 11565443 11566898 ECH