Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1252 ATGTCTTTCTTCACTCGTCTCCATCTCTTCGCTAGGCCTTTACTCTTCTACTCCCAGAATGAAGGTAGAGAAATAATGACCAGGATTGGTATGAATGCCTGCTCACTTTCTTCTGCAGTTTCAGCTGAAGCTTCAGATTTAGAATGTGATGAGACCCATGATGATGTCAAAGCAGCAGAGAAAAGTAATGCACTTTGCTTGGCTGTCTCGCAGCTTGCCAGTGAGTTCAGCAACGAGTCAATGTTATCTTTGCAGAAGTTTTTTGGTGTAAGACGTGCTCATGTGATATCTACAGGCTCCTTGAAGCTTGACCTGGCTCTTGGTATTGGAGGATTGCCAAAGGGTAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGCAAGACTACACTTGCACTTCACATAATTAAAGAAGCTCAAAAGCTTGGAGGTTATTGTGCATATCTTGATGTAGAAAATGCATTGGACTCTTCACTTATGGAATCAATAGGTGTAAATACTGAAAACCTTCTTATATCACATCCTGATTGTGCTGAAAATTTGTTGAGCATGGTTGATACATTAACAAAAAGTGGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTTATCCCCAAATGCGAACTTGATCAATTGGGAGTTTGCCCTAAACGAGATTTACAATCACAAATGATGACTAAGGCACTGCGGAAAATTCATTATTCATTATCTCACTCCCAAACTCTCATCGTTTTCATTAATCAGGTTAGATTTAGTCCAAAATCAGTTAATGGATGTGGATCCATGGAAGAGGTCACTTGTGGTGGAAATGCCTTGAGATTCTATGCAGCTGTTCGCTTGAGACTTTCAAGAATGGGATTGATCAAAACTGAGGACAAGGTAGAGGGTGTTATGATCTGTGTGCAAGTGGCAAAAAACAAACTAGCACCGGCAGCAATGAAAAAGGCTGAACTGGGTATCAAGTTTGGAAAAGGCTTTTGCCATGAGTCAGAGATCTTAGATTTTGCTTGTGAACATGGAATCATTGTGAAAGATGAGGAAAGCTACTTTATAGAAGGGGAGAGTTTCAATAGTAGAGAAGCAGCCGAACTGTTTTTGGCTAAAAATGACACCGTTTGTGACAAGTTGATTATGGATATGAGAAGATTTTATTTTTAA 1164 0.4012 MSFFTRLHLFARPLLFYSQNEGREIMTRIGMNACSLSSAVSAEASDLECDETHDDVKAAEKSNALCLAVSQLASEFSNESMLSLQKFFGVRRAHVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLALHIIKEAQKLGGYCAYLDVENALDSSLMESIGVNTENLLISHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALIPKCELDQLGVCPKRDLQSQMMTKALRKIHYSLSHSQTLIVFINQVRFSPKSVNGCGSMEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGVMICVQVAKNKLAPAAMKKAELGIKFGKGFCHESEILDFACEHGIIVKDEESYFIEGESFNSREAAELFLAKNDTVCDKLIMDMRRFYF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1252 387 ProSitePatterns recA signature. 273 281 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Apr4g1252 387 Pfam recA bacterial DNA recombination protein 64 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr4g1252 387 PANTHER RECA 24 387 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr4g1252 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 316 IPR027417 -
Apr4g1252 387 PRINTS RecA protein signature 150 179 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr4g1252 387 PRINTS RecA protein signature 184 213 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr4g1252 387 PRINTS RecA protein signature 222 251 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr4g1252 387 PRINTS RecA protein signature 270 298 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr4g1252 387 PRINTS RecA protein signature 304 333 IPR013765 GO:0003697|GO:0005524|GO:0006281
Apr4g1252 387 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 24 387 - -
Apr4g1252 387 ProSiteProfiles RecA family profile 1. 92 251 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Apr4g1252 387 SMART AAA_5 114 288 IPR003593 -
Apr4g1252 387 Gene3D - 91 385 IPR027417 -
Apr4g1252 387 ProSiteProfiles RecA family profile 2. 250 333 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1252 Apr-Chr4 11365915 11372171 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1252 - - gmx:100777423 622.854