Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1248 ATGTCCCAAGCGGCGCTGCATCAGCAATCTCCGATCAACTCCTCCGATGCAACGCCGCATTCTCAATTTCCCAATTTCAATGCCGATCCCTTCAGCACTTCCTCTTCCTCCACTCGCATCAGGTCCCGACCAAGGCTCGCTAAGCTTAGAAAGCAATCCGCTGCTCACCATGCCAGGTCCCGGAGCCGAGCCGCCGCCGTCGCCGCCGATGGCTCTGCCTTCGGCTTCAATCCTTTTTGTTCTGATCAGGTAAGTGGTCATGCTAGTGGTGCTGGAGATTGTGACGGCGGTTCTTTGAACGGCCTTCGTAGGTTTGAAAATGACGTTTTTGTGTTTGGTGCTGGGAAGGGCGATTCTGATTCTGCTAGGGATTTGGATTCTAGGAAGGGAGCGAGTGAGAAAGAAATGGAGTCTAGGAAGAGTGCTGATGTGGAATTCGTGTTTAGTGCTAAACGGAGTGATGTCGAATCGAATTCGATCCCCGAGAGAGGGGGAAATAGTAGTGGAAGTGTTGAAGAAATGGATTATGGTGATGAAAGGAAGATGTCGATTTCGGAAAGGGAGCTGGGGGGGTTCAGTAGTACGGCATTTGTTTTTAGTGCTGGTCGGAACGATTCGGTTTCTGGTTCAAATGTAGAGAAGGGAAATTCTAGTGTTTTTGTTGGTAATTCAGGGCTTGAAGACGGTGGGGAGAGGGAATGTAAGAGTGAATTTCAGAGTGAAAACCGGGAGTGTTTTGGTAGCGACCATAGTGGTAGAACAGCTAGTGTTAATGTGGAAAAGGAGGAGTGTATTGACAGCGTGCGAAATTTGGATCATGGAATGGGTGCTTTTAATGCAAACACAGAAACCAATGGTAAAAATGATACGGACGCTGATCTGTATCATCATTTGGGTAATGATGATAAGATTAGGAGTAAATATGGAAGTACTAACGGTATTTCTGCTACCTGTAGTGACATTCCAGCATGTGATTTACCAGGTGAGATGAAGAAACTGAACATCAACTATTCTGAGGGTGCTGGTGTCACTAATTTGACGAATTCATGTGTAAATAGTAGTACTGGTTTTGTGTTTGGAACTAGTGACAACGTTTCTGGCTATTCTAGTGTTAGTTCAGGAACTGATGCTGATGGTCAGCAGTCCAGTACTCATGTTGCTTTTGAGAATATTGGTGGGCAATATGTCAAAGCAGGCAAAACTAATGATGTTCAAAATGGAACTGTTTGTGGAGCACCTAGCTATATGCCATGCTCTAGTCAAGAAGGCATTGGAGGTTTCGAGTGTGGCAAAATTCCTGAATGTAACGTGTCTCAAGATTCAAAAGTGAGTGGAGCTACAGCATCATTTTCCTTCTCATCATTTGGTCTTGATTCCTATTCAAATAATTATGCTTTCATGAGCCATTTTTCTAGTTCAGATAACCGTAATGGTGAAAATTGTTTTGCAAGTACTCCAGAGGCATCCAAAGGGTCTTTTATGGACTTCAAACCCCCAACATGGGATCCTTCTTGTTTTAAGGACAACTTATTTCCTAAGTTAAATAAAAAATTTGAATCCACACAGAAGGGAAGATCTTGCAAAGATAAAGGATCAAAGTGTACGAGGCGAAAATCAAAGCTGCATTCCTTGAATAAGAAACAGACAAGGCTAGATCATTTGTCAAAGGAAAGTAGTTCACTCAAAACCCCTGATTCTTGTGGTAATCACTCACCCATGGATTTTTCTCCTTATCAGGAAACAGCAGAAAATGATCAAGATGTAAAAGCTTCAGAAGAAATAAATAGTCTACACTCAACAATTCCTGCTGATTATAAAGGTGAACACTTGCCTGCTGTGGGAAGGGAAGATACAGATAATAACAAGTCATGTAATGGAAATTCTTTTGACAATTTTCATTCTTCTGGGCCTTCTGGCCCTGAAATAGTCTGGCCTAATTTGAAAACTCAGCAATTCTGCAGTAGTAGTGTAGCTGGTACTTCGGCAGCCTCAAACACTGAAAGGAAAAATGATGATATGTTTCATTTTGTTCATGGTCTGAGTGATGCAAAGGGAAAAGATTTTGCATTTTCTGCATCATCAACTGTAGAGGGTACTTCATCACTTAAGCGTAAGCAGAAGAAGAAATTTCGGAGGAAAACAGGGTGCAACTCATTTGTTATATCTCCAAATGTGAATGGAAAGTTTGTATCTTCTGTACAAGTTTCACCACTTACCACTACCAACATGTCATCACATTCTGATGTGATGGGCAATTCTCAGAAGAATGACCAGTTAAAGGAAGGGGATATCGCATCATCAGATACAAATCCAGCAGCCTGTGACAAATGGAGGCTCAGGGGGAACCAGGCCCATAAAGATGGGGATCTTTCTAAAGCTGAAGAATTCTACACACTAGGAATAAATTCTGTCCCTTCAAGTGAAAGATCAGGATGCTGGTTCAAGCCTCTTTCACTGTGCTACAGTAACCGTGCGGCAACACGCATGAGTCTTGGAAGGATTAGAGAAGCTCTAGAGGATTGCTTGATGGCTACTGCTCTGGACCCTACCTTTCTAAAAGTACAGATGAGAACTGCTAACTGTCACCTTTTACTAGGTGAAGTAGAAAGTGCTCAGCAGTGCTATAATAAGTGCATGGAATCAGGCAGTGTTGTTTGTTTGGATCGAAGGGTTATAGTAGAAGCAGCTGAAGGTTTGCAGAAGGCTCAGGAAGTGGTCAAGTGTATAAATAATGCTGCTGAACTTTTAAAAGAGAGGACTTCTGATGCAACTGTTACTGCTTTAGAACGAATTACAAAGGCATTGTCAATAAGCTTATACTCAGAAAAATTGCTTCAAATGAAGGCAGAGGCTCTATTCTTGCTGCAAAAGTATGATGCGGCAATTCAGCTTTGTGAACAGAGTCAACTTCTTGCAGAAAAGAATTTTTCCTTAGAAAAAAAAGTGAACAATTCCAGTAGTTCCATGTGTGATAGTTACTCAAGTGTAAAATTGTGGAGGTGGTCATTGATATCCAAGTGTTACTTTCATTTGGGAAGGCTTGAAGCATCACTTAATGTTCTTGAGAGATTACAGCACATTGTGTCTGTCACGAACAAGTGTGTGATTGATAACATTGAAGACTTGTTTTCATTAGCTGCTACAATAAGAAAACTTCTGGAGCACAAGAGTGCAGGAAATGAAAACTTTAGATTGGGGAAGTATACAGAAGCTGTAGAGAATTACACTGCTGCTTTATCATGCAATTTTAAATCACGTCCTTTTGCAGCAGTATGTTTCTGCAACCGTGCTGCAGCTCATCAAGCTTTGGGCCAAATTGCTGATGCCATTGCAGACTGCAGTATGGCTATAGCCCTTGATGGAAATTATGCTAAGGCAATTTCAAGAAGAGCTACCTTACATGAGATGGTTAGAGATTATGAACAAGCAGCTTGTGACCTCAAAAGATTTGTAGCTGTTCTTGAAACTCAATCCAATGAAAAGGCTAAACTGTCTGACTCACCAAGTGGATCAAATGGTGGAAAAGAATCAAGGCAAGCTCATCAACGTCTGCATTCAGTGGAAGATCAGGCCAAAAAGGGAACCCCCTTGGACTTTTACCTCATTTTAGGAATCAAACCAGCTGATACAGCAATGGATATCAAGAAGCAATACCACAAGGCAGCTCTTAGACATCATCCAGACAAGGCTGGTCAGTTGTTGGCAAGAAGTGAAGTTGGAGATGAAGGCCAAGTCTGGAAGGAAATTTCACAGGAGGTGTACAAGGATGCGGATAGGCTTTTTAAAATGATTGGAGAGGCATATGCTGTGCTTTCAGACCCTGCCAAGCGCTCAGAGTATGATTTGGAAGAGGAGATAAGGAAAGCTTCTAAGCAAAGTAATAGAGGTGGCACATGCAGGAGATCTTCAGATGTGTATGGGTATGGAAGACCATCTGATGGTTGTAAATCTCCCTCTGACAGATCTTCAAACAGACGGTATGGCCGGGATCATTGGAAGACATATGGACATTCATATTCGCGATGGTAA 4029 0.4217 MSQAALHQQSPINSSDATPHSQFPNFNADPFSTSSSSTRIRSRPRLAKLRKQSAAHHARSRSRAAAVAADGSAFGFNPFCSDQVSGHASGAGDCDGGSLNGLRRFENDVFVFGAGKGDSDSARDLDSRKGASEKEMESRKSADVEFVFSAKRSDVESNSIPERGGNSSGSVEEMDYGDERKMSISERELGGFSSTAFVFSAGRNDSVSGSNVEKGNSSVFVGNSGLEDGGERECKSEFQSENRECFGSDHSGRTASVNVEKEECIDSVRNLDHGMGAFNANTETNGKNDTDADLYHHLGNDDKIRSKYGSTNGISATCSDIPACDLPGEMKKLNINYSEGAGVTNLTNSCVNSSTGFVFGTSDNVSGYSSVSSGTDADGQQSSTHVAFENIGGQYVKAGKTNDVQNGTVCGAPSYMPCSSQEGIGGFECGKIPECNVSQDSKVSGATASFSFSSFGLDSYSNNYAFMSHFSSSDNRNGENCFASTPEASKGSFMDFKPPTWDPSCFKDNLFPKLNKKFESTQKGRSCKDKGSKCTRRKSKLHSLNKKQTRLDHLSKESSSLKTPDSCGNHSPMDFSPYQETAENDQDVKASEEINSLHSTIPADYKGEHLPAVGREDTDNNKSCNGNSFDNFHSSGPSGPEIVWPNLKTQQFCSSSVAGTSAASNTERKNDDMFHFVHGLSDAKGKDFAFSASSTVEGTSSLKRKQKKKFRRKTGCNSFVISPNVNGKFVSSVQVSPLTTTNMSSHSDVMGNSQKNDQLKEGDIASSDTNPAACDKWRLRGNQAHKDGDLSKAEEFYTLGINSVPSSERSGCWFKPLSLCYSNRAATRMSLGRIREALEDCLMATALDPTFLKVQMRTANCHLLLGEVESAQQCYNKCMESGSVVCLDRRVIVEAAEGLQKAQEVVKCINNAAELLKERTSDATVTALERITKALSISLYSEKLLQMKAEALFLLQKYDAAIQLCEQSQLLAEKNFSLEKKVNNSSSSMCDSYSSVKLWRWSLISKCYFHLGRLEASLNVLERLQHIVSVTNKCVIDNIEDLFSLAATIRKLLEHKSAGNENFRLGKYTEAVENYTAALSCNFKSRPFAAVCFCNRAAAHQALGQIADAIADCSMAIALDGNYAKAISRRATLHEMVRDYEQAACDLKRFVAVLETQSNEKAKLSDSPSGSNGGKESRQAHQRLHSVEDQAKKGTPLDFYLILGIKPADTAMDIKKQYHKAALRHHPDKAGQLLARSEVGDEGQVWKEISQEVYKDADRLFKMIGEAYAVLSDPAKRSEYDLEEEIRKASKQSNRGGTCRRSSDVYGYGRPSDGCKSPSDRSSNRRYGRDHWKTYGHSYSRW* 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1248 1342 ProSitePatterns Nt-dnaJ domain signature. 1261 1280 IPR018253 -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 1 62 - -
Apr4g1248 1342 SMART dnaj_3 1197 1276 IPR001623 -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 1 42 - -
Apr4g1248 1342 CDD DnaJ 1198 1273 IPR001623 -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 530 544 - -
Apr4g1248 1342 SUPERFAMILY TPR-like 1054 1153 IPR011990 GO:0005515
Apr4g1248 1342 Coils Coil 899 919 - -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 1288 1331 - -
Apr4g1248 1342 SMART tpr_5 1124 1157 IPR019734 GO:0005515
Apr4g1248 1342 SMART tpr_5 774 807 IPR019734 GO:0005515
Apr4g1248 1342 SMART tpr_5 1090 1123 IPR019734 GO:0005515
Apr4g1248 1342 SMART tpr_5 818 851 IPR019734 GO:0005515
Apr4g1248 1342 SMART tpr_5 942 975 IPR019734 GO:0005515
Apr4g1248 1342 SMART tpr_5 1052 1085 IPR019734 GO:0005515
Apr4g1248 1342 SMART tpr_5 852 885 IPR019734 GO:0005515
Apr4g1248 1342 SUPERFAMILY TPR-like 772 971 IPR011990 GO:0005515
Apr4g1248 1342 SUPERFAMILY Chaperone J-domain 1180 1280 IPR036869 -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 1161 1185 - -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 119 138 - -
Apr4g1248 1342 Gene3D Tetratricopeptide repeat domain 1050 1168 IPR011990 GO:0005515
Apr4g1248 1342 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 14 1342 - -
Apr4g1248 1342 ProSiteProfiles dnaJ domain profile. 1198 1284 IPR001623 -
Apr4g1248 1342 Gene3D DnaJ domain 1183 1303 IPR036869 -
Apr4g1248 1342 Gene3D Tetratricopeptide repeat domain 763 905 IPR011990 GO:0005515
Apr4g1248 1342 MobiDBLite consensus disorder prediction 741 765 - -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 560 584 - -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 1161 1177 - -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 118 138 - -
Apr4g1248 1342 Pfam DnaJ domain 1198 1281 IPR001623 -
Apr4g1248 1342 PRINTS DnaJ domain signature 1200 1218 IPR001623 -
Apr4g1248 1342 PRINTS DnaJ domain signature 1218 1233 IPR001623 -
Apr4g1248 1342 PRINTS DnaJ domain signature 1256 1276 IPR001623 -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 545 559 - -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 155 174 - -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 43 58 - -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 522 584 - -
Apr4g1248 1342 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 14 1342 - -
Apr4g1248 1342 MobiDBLite consensus disorder prediction 741 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1248 Apr-Chr4 11306237 11315811 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1248 K09527 - gmx:100809278 1649.8