Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1220 ATGGCCAGCACCGCAACTCACTGTCTCCAATTCGCCGGCACCACCGAGTCGACTCGCCGGGGAATTCTGATAACATGCAAAAAGAACAAGAATGAGTCGGCATTCAAGGAAACGAAGCAAGGCTTCGTTGACTACGACAGAGGACAGCATGAAGTCTCCACCAAAGTCGCCGGCCTCCGCAAAGACGACATCCGCGCCAGATACCGCCTCCGAGTCGCCGGAAACCGCTTCCAGAAGGATTGGACAGTGTCCAAGGTTGCCGACGTGGTTCTCTCCCTCTCTCTCCGCGACGACGTTGAGGGTGTCCTCAATCGCTGGATAGGTCGCTTCGCACGCAAGAATTTCCCCTTTCTCATCAAGGAGTTGACACAGAGAGGGACTATTGAACACTGTAACGCTGTGTTCCAGTGGATGAAGAACCAGAGGAATTACTGTGCTCGCACTGATATTTACAACATGATGATTAGGTTGCACGCTAGGCACAATCGAACAGACCAGGCGCGTGGATTGTTTTTCGAGATGCAAGAATGGAGGTGTAAACCTGATGTTGAGACTTACAATGCTCTTATTAATGCGCACGGTAGAGCTGGACAGTGGCGTTGGGCTATCAATATCATGGATGACATGCTGCGTGCAGCTATTCCACCAAGTCGGTCAACTTATAACAACATGATAAATGCTTGTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACAGACAATGGAGTTGGACCTGATCTTGTTACTCACAATATTATGTTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACTACACTTAATATCATTATCCATTGTCTGGTGAAGCTTCGACAATATGACAAAGCCATTGATATTTTTAATTCCATGAGAGAAAAGAGGTCAGAATGTCACCCTGATGTTGTAACGTTCACTAGTATCATTAACTTATATTCTATGTGCGGGCAAGTTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCAGAAGGGCTGAAGCCAAATATAGTCTCATATAATGCACTAATAGGTGCATATGCTGCTCAAGGGATGGACAATAAGGCACTTTTGGTTTTCCACGAGATAAAACAAAATGGTTTACGCCCAGATATTGTATCATATACATCTCTGCTTAATGCTTATGGAAGATCACAAAAGCCCCTAAAAGCAAGGGAAGTATTTGAAAAGATAAAGGTAAACAAGTTGAAGCCAAACCTTGTCAGCTACAATGCGCTGATTGATGCCTATGGATCTAATGGTTTGCTGGCAGAAGCAATTGAAATATTGCGGGAAATGGAACAAGATGGAATTGAGCCAAACGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGTCGATGCAGTCGGAAGGTGAAGGTTGATACAGTGCTAACTGCAGCTAAGATGCGAGGCATTGAGTTGAACACAGTTGCATACAATTCAGCTATAGGAAGTTATATGAATGTAGGGGAATATGACAAAGCTATAGCATTGTATAGATCTATGAGAAAGAAAAAAATAAAACCTGATTCTGTTACCTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCAATCTTTTATAGAAGAAATGATGCATCTAAAACTTCCTTTGTCAAAAGAGGTCTACTCATCTGTCCTATGTGCCTATAGCAAACAGGGACAAATCACAGAAGCAGAATCTACATTCAATTTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATATACTGCAATGCTTGATGCATACAATGTAGCTGAGAATTGGGAGAAAGCATATGCACTCTTTGAAGAAATGGAAGCAAATGGCACCAAGCTAGATACCATTGCATGTGCAGCTGTAATGAGAGCTTTTAATAAAGGTGGCCAACCAGGACGCGTCCTTAGTCTTGCAGAAAGTATGAGAGAAAAAGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCTTATTACAAGATTGGAGAACATCTGTTGATATGATCAAGCACATAGAGCCCTCACTTCCTGCAATTTCTTCTGGATGTTTGAATTTGTTCCTGCATTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTTAAAATGTTGGCTTCGGGTGCTGACGTCAACTTCAATACTTATTCTATCTTATTGAAGAACCTTTTATCGTCTGGAAATTGGAGGAAATATTTGGAGGTCCTGCAATGGATGGAGGATGCAGGAATTCATCCATCAAATGAAATGTATCATGATATATCCTCCTTTTCACAAAAATGCTGTGGGGCAGAAAATGCTGCTGTCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCTGGGGATCAAATTTCTGCAGGGGAACCATGCGAATCTCGTGTTCTTAGTTAG 2490 0.4161 MASTATHCLQFAGTTESTRRGILITCKKNKNESAFKETKQGFVDYDRGQHEVSTKVAGLRKDDIRARYRLRVAGNRFQKDWTVSKVADVVLSLSLRDDVEGVLNRWIGRFARKNFPFLIKELTQRGTIEHCNAVFQWMKNQRNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNALINAHGRAGQWRWAINIMDDMLRAAIPPSRSTYNNMINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIIIHCLVKLRQYDKAIDIFNSMREKRSECHPDVVTFTSIINLYSMCGQVENCEAAFNMMLAEGLKPNIVSYNALIGAYAAQGMDNKALLVFHEIKQNGLRPDIVSYTSLLNAYGRSQKPLKAREVFEKIKVNKLKPNLVSYNALIDAYGSNGLLAEAIEILREMEQDGIEPNVVSICTLLAACGRCSRKVKVDTVLTAAKMRGIELNTVAYNSAIGSYMNVGEYDKAIALYRSMRKKKIKPDSVTYTVLISGCCKMSKYGEAQSFIEEMMHLKLPLSKEVYSSVLCAYSKQGQITEAESTFNLMKSSGCYPDVVTYTAMLDAYNVAENWEKAYALFEEMEANGTKLDTIACAAVMRAFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSLLQDWRTSVDMIKHIEPSLPAISSGCLNLFLHSLGKSGKIETMLKLFFKMLASGADVNFNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSNEMYHDISSFSQKCCGAENAAVIKERLESLKRKSGDQISAGEPCESRVLS* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 744 778 IPR002885 -
Apr4g1220 829 SUPERFAMILY TPR-like 182 311 IPR011990 GO:0005515
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Apr4g1220 829 Gene3D Tetratricopeptide repeat domain 652 822 IPR011990 GO:0005515
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Apr4g1220 829 PANTHER OS07G0213300 PROTEIN 23 787 - -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 220 252 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 150 183 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 185 217 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 431 465 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 606 639 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 536 566 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 254 288 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 501 535 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 361 395 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 572 605 IPR002885 -
Apr4g1220 829 TIGRFAM PPR: pentatricopeptide repeat domain 290 318 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Apr4g1220 829 Pfam PPR repeat 150 179 IPR002885 -
Apr4g1220 829 Gene3D Tetratricopeptide repeat domain 246 316 IPR011990 GO:0005515
Apr4g1220 829 Gene3D Tetratricopeptide repeat domain 388 458 IPR011990 GO:0005515
Apr4g1220 829 Gene3D Tetratricopeptide repeat domain 565 636 IPR011990 GO:0005515
Apr4g1220 829 Gene3D Tetratricopeptide repeat domain 82 245 IPR011990 GO:0005515
Apr4g1220 829 Gene3D Tetratricopeptide repeat domain 317 387 IPR011990 GO:0005515
Apr4g1220 829 Gene3D Tetratricopeptide repeat domain 459 564 IPR011990 GO:0005515
Apr4g1220 829 Pfam Pentatricopeptide repeat domain 382 443 IPR002885 -
Apr4g1220 829 Pfam Pentatricopeptide repeat domain 732 780 IPR002885 -
Apr4g1220 829 Pfam Pentatricopeptide repeat domain 240 299 IPR002885 -
Apr4g1220 829 Pfam Pentatricopeptide repeat domain 447 476 IPR002885 -
Apr4g1220 829 Pfam Pentatricopeptide repeat domain 318 370 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Apr4g1220 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Apr4g1220 829 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 23 787 - -
Apr4g1220 829 SUPERFAMILY TPR-like 287 630 IPR011990 GO:0005515
Apr4g1220 829 Pfam PPR repeat family 499 547 IPR002885 -
Apr4g1220 829 Pfam PPR repeat family 181 228 IPR002885 -
Apr4g1220 829 Pfam PPR repeat family 572 615 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1220 232 792 Glycosyltransferase AT1G05670 23.132 1.15e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1220 - - gmx:100814643 1493.79