Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1196 ATGCCAGAACCTGACCTCCCTCTGCAACTACAACAGAGCTACCCCCAGCATCTCTGCAACCTCCTACTCTCTCAAACCCAAGCAAGGTCCCTTCCCAAAGGCCTCCAACTCCATGCCCACATCATCAAAACAGGGTTCCAATCCATTCCTCTGATCTCACACTACCTCATCAACTTCTACTCTAAGACCCAACTTCCTCACTCTTCTCACCAACTCTTCCATGAAACCCCACACCACTCTTACACTACTTGGAGCTCCCTCATCTCCTCCTTCGCTCAAAACCAACTCCCCCACCTCGCCCTCCACTTCCTGCGCCGCATGCTCCGCCATGGCCTTCTCCCCGACGACCACATTTTCCCCAGCGCCACCAAATCCTGCGCCACCCTCTCCGCCCTCCACGTCGGCATGTCCCTCCATTCCCTTGCTTTCAAGACCGCCTACCATTTTGATGTTTTCGTTGCCTCCTCCCTCGTTGACATGTACGCTAAATGTGCTGAAATAGGGTTTGCCAGGAAGGTGTTTGATGAAATGCCTCAGAGAAATGTGGTGTCTTGGAGTGGGATGATATATGGGTATGCACAAATGGGGTATGATGAGGAGGCTTTGAGTTTGTTTAAGGGTGCTTTGGTGGAAAACGTTGGTGTTAATGATTTTACCTTGTCTAGTGTTTTGAGGGTTTGTAGTGCTTCTACTTTGTTTGAGTTGGGGAAGCAAGTGCATGGATTGAGCTTTAAGACCAGCTTTGATTCGTCGTGCTTTGTTGCTAGTTCGTTGATCTCGCTGTACTCCAAGTGTGGGGTTGTGGAGGGAGGTTACCAGGTTTTTGAGGAGATAAAGGTGAGGAACCTTGGCATGTGGAATGCAATGTTGATCGCCTGTGCGCAGCACGCGCACACAGGGAAAGTGTTTGAGCTGTTTGAGGAAATGGGGAGTGTTGGGGTGAAGCCGAATTTTATTACTTTTTTGTGTATGCTTTATGCTTGTAGTCATGCAGGGTTGGTGGAGAGGGGGCAAGGTTACTTTGAGATGATGAAAAAGTATGGGATTGAACCGGGGTCTCAGCATTATGCTACCATGGTGGATTTACTTGGTCGTGCTGGGAGATTGGATGATGCGGTTCGAGTGATACAAGAGATGCCTATGGAACCTACAGAATCTGTTTGGGGTGCTTTGTTGACAGGGTGTAGAATACATGGGAACACTGAGTTGGCATCCTATGTGGCTGATAAAGTTTTTGAGATGGGTTGTGTGAGCTCTGGCCTTAATGTTTTGTTGTCTAATGCTTATGCTGCTGCTGGAAGATGGGAGGAAGCGGCTAGAGCGAGGAAGATGCTGAGGGACCAAGGCATAAAGAAGGAAACTGGTTTGAGTTGGGTGGAGGAGGGGAATAGAGTTCACACATTTGCTGCTGGGGATAGGTGTCATGCCAAAACCAAGGAAATTTATGACAAGTTAGAGGAGTTAGAAGAAGGAATAACCAAAGCTGGTTATGTTGCAGACACTTCTTTTGTGTTGAAAGAAGTGGATGGGGATGAGAAGAGCCAAACTATTAGGTATCATAGTGAAAGGTTAGCCATAGCATTTGGCCTCATTACTTTCCCTCAGGGAAGACCAATCAGAGTAATGAAGAATTTGCGTGTGTGTGGTGATTGCCACACTGCGATCAAGTTTATTAGCAAATGCACTGGAAGGGTGATCATTGTGAGGGACAATAACAGGTTCCACCGATTTGAGGATGGACATTGCACTTGTGGAGATTACTGGTAA 1767 0.4765 MPEPDLPLQLQQSYPQHLCNLLLSQTQARSLPKGLQLHAHIIKTGFQSIPLISHYLINFYSKTQLPHSSHQLFHETPHHSYTTWSSLISSFAQNQLPHLALHFLRRMLRHGLLPDDHIFPSATKSCATLSALHVGMSLHSLAFKTAYHFDVFVASSLVDMYAKCAEIGFARKVFDEMPQRNVVSWSGMIYGYAQMGYDEEALSLFKGALVENVGVNDFTLSSVLRVCSASTLFELGKQVHGLSFKTSFDSSCFVASSLISLYSKCGVVEGGYQVFEEIKVRNLGMWNAMLIACAQHAHTGKVFELFEEMGSVGVKPNFITFLCMLYACSHAGLVERGQGYFEMMKKYGIEPGSQHYATMVDLLGRAGRLDDAVRVIQEMPMEPTESVWGALLTGCRIHGNTELASYVADKVFEMGCVSSGLNVLLSNAYAAAGRWEEAARARKMLRDQGIKKETGLSWVEEGNRVHTFAAGDRCHAKTKEIYDKLEELEEGITKAGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPQGRPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGHCTCGDYW* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1196 588 Pfam Pentatricopeptide repeat domain 282 328 IPR002885 -
Apr4g1196 588 Pfam E+ motif 465 488 IPR046849 -
Apr4g1196 588 Gene3D Tetratricopeptide repeat domain 12 134 IPR011990 GO:0005515
Apr4g1196 588 Gene3D Tetratricopeptide repeat domain 250 487 IPR011990 GO:0005515
Apr4g1196 588 PANTHER OS01G0913400 PROTEIN-RELATED 16 532 - -
Apr4g1196 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Apr4g1196 588 Pfam PPR repeat 356 380 IPR002885 -
Apr4g1196 588 Pfam PPR repeat 83 112 IPR002885 -
Apr4g1196 588 Pfam PPR repeat 183 206 IPR002885 -
Apr4g1196 588 Pfam PPR repeat 155 182 IPR002885 -
Apr4g1196 588 PANTHER BNAA10G28390D PROTEIN 16 532 - -
Apr4g1196 588 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Apr4g1196 588 TIGRFAM PPR: pentatricopeptide repeat domain 356 379 IPR002885 -
Apr4g1196 588 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Apr4g1196 588 TIGRFAM PPR: pentatricopeptide repeat domain 83 115 IPR002885 -
Apr4g1196 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Apr4g1196 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Apr4g1196 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Apr4g1196 588 Pfam E motif 398 460 IPR046848 -
Apr4g1196 588 Gene3D Tetratricopeptide repeat domain 135 239 IPR011990 GO:0005515
Apr4g1196 588 Pfam DYW family of nucleic acid deaminases 496 588 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1196 Apr-Chr4 10455074 10458282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1196 5 588 Glycoside Hydrolase AT3G49170 36.364 3.41e-128 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1196 - - lang:109356914 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1196 4 10455074 10458282 Apr4g1196 4 10455074 10458282 ECH