Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1182 ATGGACAAGCCACCACTCTTCCCTTTCCAAATCATCTTACTCCTTCTCACCCCATCACTCCTCGCCACGTCACACCCTCTTACCCCCATCCCTATTACCCTCTCCGTCGCCGACTTCGGCGCCGCCGGCGACGGCCTCCGCTACGACACCGCAGCAATCCAATCCGCCATCGACTCCTGCCCGGACGGTGGCCCCTGCCATGTCACTTTCCCGGCGCCGGGAAAATACCTAACGGCAACTGTTTTCCTGAAATCCGGCGTGATCTTGAACGTGGAGAGCGGAGCCACCATCCTTGGCGGCACGAGGCTAGAGGACTACCCGAAGGATTCGTCGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGGACGTCGGAATCAGCGGCGGCGGAGTGGTGGACGGACAAGCAGCGAAGTTCGTGGTGAGAGAAGATCCGAGGAAGAACATTATGGTTAGCTGGAACCAAACAGGTGCTTGTTTGGGAGACGAATGCAGACCCAGACTCGTCGGTTTTCTCGGCTGCAACAACGTTAGAGTCTCCAACGTTACGCTTAACCAACCTGCTTACTGGTGCTTACACTTGGTACGAAGTGAAAACATATCCATTCACGACATTGACATATACGGGGACTTGAATATACCAAACAACGATGGAATTGACATTGAGGACTCAAACAACACGGTAATCACTGGATGCCACATTGACACAGGGGATGATGCAATCTGTCCAAAGTCATCCACAGGCCCTGTTTACAACCTCACAGTCACCAATTGTTGGATTCGTTCCAAATCTTCTGCAATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGACAATATCACCATTGTTGATTCTCACAGAGGCCTTGGGTTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTATTCTCAAACATAAATATCAGCACAAGATACTATGATCCATCATGGTGGGGGAGAGCAGAGCCTATCTATGTCACAACTTGCCCACGAGACTCAACCTCAAAGGAGGCATCAATCTCAAATATACTTTTCATTAACATCACTGCAAATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGAAAGGATTGCTAAGAAATTTGAAATTCATCAACATGGATATCACATTTAGAAGGTTCACCAATTATGCTGGTGGGTTATTGGACTATAGACCAGGATGCCAAGAGTTGGTTAAACACAGAACTGCAGGCATCATGATGGAGCACATTGAAGGTCTTGAGGTTAAAAATGTTGAAATGAGATGGTCAAACAATGAACTAGAGCAATGGAATAATCCTTTAGAGTTTAGGCCATCAACTGTGAATAACATCTCTTTCCTTAATTTTAATTCTGGTTTGCGTACAGATATAAATAGCAAATCAGATTATTAA 1413 0.4685 MDKPPLFPFQIILLLLTPSLLATSHPLTPIPITLSVADFGAAGDGLRYDTAAIQSAIDSCPDGGPCHVTFPAPGKYLTATVFLKSGVILNVESGATILGGTRLEDYPKDSSRWYVVVAENATDVGISGGGVVDGQAAKFVVREDPRKNIMVSWNQTGACLGDECRPRLVGFLGCNNVRVSNVTLNQPAYWCLHLVRSENISIHDIDIYGDLNIPNNDGIDIEDSNNTVITGCHIDTGDDAICPKSSTGPVYNLTVTNCWIRSKSSAIKLGSASWFDFKHFVFDNITIVDSHRGLGFQIRDGGNVSDIVFSNINISTRYYDPSWWGRAEPIYVTTCPRDSTSKEASISNILFINITANSENGIFLSGSKKGLLRNLKFINMDITFRRFTNYAGGLLDYRPGCQELVKHRTAGIMMEHIEGLEVKNVEMRWSNNELEQWNNPLEFRPSTVNNISFLNFNSGLRTDINSKSDY* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1182 470 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 25 460 - -
Apr4g1182 470 PANTHER PECTIN LYASE-RELATED 25 460 - -
Apr4g1182 470 Gene3D - 22 392 IPR012334 -
Apr4g1182 470 SUPERFAMILY Pectin lyase-like 16 397 IPR011050 -
Apr4g1182 470 SMART pbh1 304 334 IPR006626 -
Apr4g1182 470 SMART pbh1 197 223 IPR006626 -
Apr4g1182 470 SMART pbh1 224 245 IPR006626 -
Apr4g1182 470 SMART pbh1 250 271 IPR006626 -
Apr4g1182 470 SMART pbh1 341 366 IPR006626 -
Apr4g1182 470 SMART pbh1 174 196 IPR006626 -
Apr4g1182 470 Pfam Glycosyl hydrolases family 28 62 383 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1182 Apr-Chr4 10274870 10277285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1182 23 470 Glycoside Hydrolase AT3G57790 68.113 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1182 - - gmx:100794954 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1182 4 10274870 10277285 Apr4g1182 4 10274870 10277285 ECH