Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1116 ATGAGAAAACTCTTTATTCTCGTTCCTCACAAACATAAATCATCGTATTCGTACTTTCTCCAACACCGCAAACCACTGTCCGCGTCCGTTTCTAGTTCCACCATTACTAACCAACCAAAATGGAACTCCAAAACCAACGTGGTGATCACACACCCAACTCTTCTCGTCATGGAATCATGTTCATCCATGCCACAATTGAAGCAGATTCAAGCACGCATGACCCTCACTGGCCTCATCACGCACACCTTCCCTCTCAGCCGAGTCATCGCTTTCTGCGCTCTCGCCGATGCCGGTGACATTCGCTACGCTCACCTTCTCTTCCACCACTTTCACCAACCCAACACCTATATGTGGAACACCATGATTCGTGGCTATATCAAGGCACAAATTCCCACCTTGGCTTTCTCGTTCTTTCTCCGTATGCTTCGACGACGCGTTCCGATGGATTGCAGGACCTTCGTTTTCGCTCTCAAGGCGTGCGAGAAGTTTTTGAGGGCTTCTGAAGGGGAATCGGTGCATTGCGTAGGTTGGAAAATGGGGTTTGGTTCTGAGTTGATCGCGCGAAATGGGTTGGTTCATTTTTATGCTGATCGTGGTTGGTTGAAGCACGCGCGTGAAGTGTTTGATGAAAGTTCTGACAGGGATGTTGTTACTTGGACCACGATGATTGACGGGTATGCGGCCCATAACTGTTCAGATGCGGCTATGGGGTTGTTTAGTTTGATGTTGGTGAGTGATGTTGAGCCCAATGAGGTGACTTTGATCGCGGTGCTTTCCGCGTGTTCTCAGAAGGGTGACATTGAAATGGGGAAAAGCATTCATGAAAATGTGGAGAAGAAGAATGTAAGGTGTGGGTTGAGTTTACACAATGCCTTGTTGGATATGTATGTGAAATGTGGTTGTTTGATGGCTGCTAGGGAGCTTTTTGACAGGATGGAAACTAAGGATGTTTTCTCATGGACTAGCATGGTTAATGGGTATGCTAAATGTGGTGACTTGGAGTCTGCAAGGAGGTTTTTTGATCAAACTCCTCAGAAAAATGTGGTCTGCTGGAGTGCAATAATTGCAGGATATTCTCAGAATAACAAACCCAAGGAATCGTTGAAATTGTTTCGCAAAATGGTTGGGGTGGGTGTGGTTCCGGGTGAGCACACCTTAGTGAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTGGGTCATTGGATTTGTCAGTATTTTGTCAATGAAAAAAGAATGCCCCTTAGTGTTACTCTCGCAAATGCCATTATAGATATGTATGCCAAATGTGGAAGCATAGATGCAGCTGCAGAAGTCTTCCGTGGAATGCCGGAGAGAAACCTGGTTTCTTGGAATTCAATGATTGCAGGGTATGCTGCCAATGGTCAAGCAAAGCACGCTATCTACATTTTTGATGAGATGAGATATATGGGATTTAAGCCAGATGGCATTACATTTGTGAGCTTGTTGACAGCTTGCAGTCATGGTGGTTTAATTTCTGAAGGTCAAGAATACTTTGATACTATGGAAAGAAACTATGGGATAAAACCCAAAAAGGAACATTATGCATGCATGATTGATCTACTAGGTCGAACTGGGCTTCTGGAAGAAGCTTACAAGTTAATAACAAACATGCCAATGCAACCTTGTGAAGCTGCTTGGGGTGCCCTTCTAAATGCTTGTAGAATGCACGGCAATGTTAAGTTGGCCAGATTGTCGGCTCGTCATCTTTTAAGCTTGGATCCAGAAGACAGTGGCATTTATGTGCTGTTGGCAAATATTTGTGCTAAAGAGAGAAAATGGGGTGATGTGAAGAGAGTGCGTAGTTTGATGAGAGACAAGGGTGTGAAGAAGATTCCTGGTCATAGCTTAATAGACATAGATGGTGAATTCAAAGAATTTTTGGTGGCAGATGAATCACACCCTCAATCTGAGGAGATCTATAAAATACTAGATGAAATATTTTTGTTGTCAAAATTGGAAGACTCTGACTTTTAG 2004 0.4411 MRKLFILVPHKHKSSYSYFLQHRKPLSASVSSSTITNQPKWNSKTNVVITHPTLLVMESCSSMPQLKQIQARMTLTGLITHTFPLSRVIAFCALADAGDIRYAHLLFHHFHQPNTYMWNTMIRGYIKAQIPTLAFSFFLRMLRRRVPMDCRTFVFALKACEKFLRASEGESVHCVGWKMGFGSELIARNGLVHFYADRGWLKHAREVFDESSDRDVVTWTTMIDGYAAHNCSDAAMGLFSLMLVSDVEPNEVTLIAVLSACSQKGDIEMGKSIHENVEKKNVRCGLSLHNALLDMYVKCGCLMAARELFDRMETKDVFSWTSMVNGYAKCGDLESARRFFDQTPQKNVVCWSAIIAGYSQNNKPKESLKLFRKMVGVGVVPGEHTLVSVLSACGQLSCLNLGHWICQYFVNEKRMPLSVTLANAIIDMYAKCGSIDAAAEVFRGMPERNLVSWNSMIAGYAANGQAKHAIYIFDEMRYMGFKPDGITFVSLLTACSHGGLISEGQEYFDTMERNYGIKPKKEHYACMIDLLGRTGLLEEAYKLITNMPMQPCEAAWGALLNACRMHGNVKLARLSARHLLSLDPEDSGIYVLLANICAKERKWGDVKRVRSLMRDKGVKKIPGHSLIDIDGEFKEFLVADESHPQSEEIYKILDEIFLLSKLEDSDF* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1116 667 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 327 661 - -
Apr4g1116 667 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 43 328 - -
Apr4g1116 667 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Apr4g1116 667 SUPERFAMILY TPR-like 191 342 IPR011990 GO:0005515
Apr4g1116 667 TIGRFAM PPR: pentatricopeptide repeat domain 289 317 IPR002885 -
Apr4g1116 667 TIGRFAM PPR: pentatricopeptide repeat domain 451 484 IPR002885 -
Apr4g1116 667 TIGRFAM PPR: pentatricopeptide repeat domain 116 150 IPR002885 -
Apr4g1116 667 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Apr4g1116 667 TIGRFAM PPR: pentatricopeptide repeat domain 423 450 IPR002885 -
Apr4g1116 667 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Apr4g1116 667 TIGRFAM PPR: pentatricopeptide repeat domain 318 342 IPR002885 -
Apr4g1116 667 Gene3D Tetratricopeptide repeat domain 62 178 IPR011990 GO:0005515
Apr4g1116 667 Gene3D Tetratricopeptide repeat domain 179 276 IPR011990 GO:0005515
Apr4g1116 667 Gene3D Tetratricopeptide repeat domain 426 634 IPR011990 GO:0005515
Apr4g1116 667 Gene3D Tetratricopeptide repeat domain 277 422 IPR011990 GO:0005515
Apr4g1116 667 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Apr4g1116 667 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 346 IPR002885 -
Apr4g1116 667 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Apr4g1116 667 Pfam E motif 566 627 IPR046848 -
Apr4g1116 667 Pfam PPR repeat family 214 261 IPR002885 -
Apr4g1116 667 Pfam PPR repeat family 346 393 IPR002885 -
Apr4g1116 667 Pfam PPR repeat family 113 160 IPR002885 -
Apr4g1116 667 Pfam PPR repeat family 449 496 IPR002885 -
Apr4g1116 667 Pfam PPR repeat 524 547 IPR002885 -
Apr4g1116 667 Pfam PPR repeat 289 316 IPR002885 -
Apr4g1116 667 Pfam PPR repeat 318 343 IPR002885 -
Apr4g1116 667 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Apr4g1116 667 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 327 661 - -
Apr4g1116 667 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 43 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1116 Apr-Chr4 9437225 9439601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1116 71 656 Glycoside Hydrolase AT3G49170 32.609 1.21e-95 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1116 - - ccaj:109796361 1080.09