Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1113 ATGACAATGAAGCGAGTGTGGAGATTCTCTTCAGACGCAGCGCAAGCTCAATTGTTTCTCTCTCAATTCCATGGAAAATCTCACTCCACAAAGCCCAGAATCGTTCCTTCCTTCATCGCTCGCCAGGTCAATACCCTTTCAAACGGATTATCTGAAATCGCTGTCTTGTTCACTGCGAAGCCTGGCTCTTCATCCGAAAACTATAGGATGGCAATTTTGAGGAACCAATTGGTTCGAGAATCTTCAGACTCTGTTCGGGTTCGCAAGATTTTGGATGAGAATTCTGAAGCTTTGAATCTGCATCAACCTGGTGGACACGCGTTGCTTGAGCTTTTGTATCAATTGAATTCAAACCCTTCTCTTGCCCTTCAGGTGTTTAATTGGAGAAGAAAGAACTCTAATGTTGGAAACCCTATGAATTATTTTGAGTACTCAAAGGGTATAAAACTTGCAGGTAGATGTAAGAATGTTGATTTTGCATTTGAACTCTTTAAAGAGGCTTCAACCAAAGGTCTCAGGTCAACCAGCACTTACAATGCACTTATGGCTGCTTATATGTTTAATGGTCTTGCTGATAGGTGCCAGTCTTTGTTCTGTGATATGAAGCGGGATCCAACATGTAATCCATCCATTGCCACGTACAATATTCTTTTATCTGTTTTTGGTAGCTTGATGCTGGTTGATTACATGGAAGCTACATTTCAGGAGATAAATAAGTTACATCTTGACTTGAATATATGCACTTATAATTATTTAATTTCTGGATATATTGCTGCTTGGATGTGGAATGACATGGAAAAGGCTTTTCAAATGTTGAAGTCCAGTCCTGTCCGACCTAACTTGAAAACCTACCTACTAATGCTTCGTGGGTATGCACATTCGGGTAATCTGGAAAAGATGGAAGAGATGTATTCCTTGGTAAGGGATCATGTAAATGAAAAGGAAATTCCACTGCTCAGGTCTATGATATGTGCCTACTGTAAAAGTAATCAAGCAGATAAAATTAGGAAAATAGAGGTATTGTTGAAGCTTATTCCAGAAGAAGAGTACAGGCCATGGTTAAATGTATTGTTAATTAAGCTTTATGCCCGAGAACACTGGATAGAGGAAATGGAGAATGCACTAAATGTGGCATTTGAGCACGGAACCCCTGTAACAACCGTGAGTATTATGAAATGCATAATTACAACTTATTTTCGCTCCAATGCACTAGACAAGCTAGAAAATTTTGTGAGACGTGCTGAAAGTTTTGGTTGGAGAAGCTGCCGCTCCTTATATCATTGTAAGCTGGTCATGCTTGGAGGACAACATCACTTAAATAAAATGCAGGATGTCCTTTGGGAGATGGAAAGTGTCAACCTTGGTTGTACAAAGAAAACACTGTGGATAATGTACAAGGTTTACTTCAGCTGTGGCCAGAAATCCATGGTTTTGAAAACATTGGGACAAATGTTTAAGCATGGTCATGAAGTTCCCCTGCATGCATTTCCATCATAA 1497 0.3975 MTMKRVWRFSSDAAQAQLFLSQFHGKSHSTKPRIVPSFIARQVNTLSNGLSEIAVLFTAKPGSSSENYRMAILRNQLVRESSDSVRVRKILDENSEALNLHQPGGHALLELLYQLNSNPSLALQVFNWRRKNSNVGNPMNYFEYSKGIKLAGRCKNVDFAFELFKEASTKGLRSTSTYNALMAAYMFNGLADRCQSLFCDMKRDPTCNPSIATYNILLSVFGSLMLVDYMEATFQEINKLHLDLNICTYNYLISGYIAAWMWNDMEKAFQMLKSSPVRPNLKTYLLMLRGYAHSGNLEKMEEMYSLVRDHVNEKEIPLLRSMICAYCKSNQADKIRKIEVLLKLIPEEEYRPWLNVLLIKLYAREHWIEEMENALNVAFEHGTPVTTVSIMKCIITTYFRSNALDKLENFVRRAESFGWRSCRSLYHCKLVMLGGQHHLNKMQDVLWEMESVNLGCTKKTLWIMYKVYFSCGQKSMVLKTLGQMFKHGHEVPLHAFPS* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1113 498 PANTHER EXPRESSED PROTEIN 43 497 IPR044179 GO:0003729
Apr4g1113 498 Gene3D Tetratricopeptide repeat domain 241 310 IPR011990 GO:0005515
Apr4g1113 498 Gene3D Tetratricopeptide repeat domain 71 240 IPR011990 GO:0005515
Apr4g1113 498 Gene3D Tetratricopeptide repeat domain 353 495 IPR011990 GO:0005515
Apr4g1113 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Apr4g1113 498 Pfam PPR repeat family 174 220 IPR002885 -
Apr4g1113 498 Pfam PPR repeat family 245 292 IPR002885 -
Apr4g1113 498 TIGRFAM PPR: pentatricopeptide repeat domain 283 307 IPR002885 -
Apr4g1113 498 PANTHER OS05G0407900 PROTEIN 43 497 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1113 152 388 Miscellaneous Gene Families AT4G11690 24.014 9.07e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1113 - - gmx:100816768 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1113 4 9416634 9420754 Apr4g1113 4 9416634 9420754 ECH