Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1107 ATGGCAAAGAAAGAGGATGGAATCAGAGAGCCACTGGTGGAGGGACTGGAGAACCAGCTTGTCCATGCAAGCAAAGGGCATCCATGGATGGTTTACTTCACTACATTTGTCGCAGTCTGTGGTTCTTATGAGTTTGGAACTTGTGCTGGATATTCGTCTCCCACTCAAGATGCTATTAGGAAGGATCTCAATTTATCTTTGGCGGAGTACTCCTTGTTTGGCTCCATCTTGACTTTTGGTGCAATGATTGGGGCAATAACAAGTGGGCCTATTGCTGATTTTATTGGACGAAAAGGGGCAATGAGAGTGTCAAGTGCTTTCTGTGTCGCAGGGTGGCTTGTTATATACTTTTCTGAGGGTCCAGTGCCTTTGGACATTGGGAGACTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTTGTAGCAGAAATTGCACCTAAAGAACTCCGGGGGGCACTGACTACCTTAAATCAGTTTATGATTGTTGCTGCAGTGTCGGTGTCATTCGTAATTGGAAATGTACTTTCATGGAGGGCTTTAGCTTTAACTGGCCTCATTCCCACTTCTGTATTGCTTTTGGGTCTGTTTTTTATTCCAGAGTCTCCTAGATGGCTGGCAAAGAGAGGGCGTCATAAAGATTTTGAGGCAGCACTTCAGGTACTTCGTGGCAAAGATGCTGATATATCTGAAGAGGCAGAGGAAATTCAGGATTATATAACTTCTTTAGAACGGCTCCCAAAATCCAAGCTGCTGGAATTGTTTCAAAGAAGATATTTGCGCTCAGTCACTATTGGAATAGGACTTATGGTCTGCCAGCAATTTGGGGGTATCAATGGAATTTGCTTTTATACCAGCAGTATTTTTGAGCTAGCAGGATTTTCTCCCACCATCGGGACTATAATATATGCTTGCCTTCAGATTGTGATCACAGGTATTGGAGCAGCCTTCATAGATAAAGCAGGCAGGAAGCCCCTACTATTGTTATCTGGATCAGGATTGGTCGCCGGATGTATATTTGCAGCAGTTGCATTCTATCTCAAGGTTCACGAGGTGGGTTTGGCGGCTGTCCCAGGGCTCGTTTTAACAGGCATACTGGTCTACATTGGATCATTTTCAATAGGAATGGGAGCAATTCCATGGGTTGTAATGTCTGAGATATTTCCTGTCAATATTAAAGGGCTGGCAGGAAGCATGGCCACATTAGTGAACTGGTTTGGAGCATGGCTATGTTCTTATACTTTCAACTTTCTCATGAGCTGGAACCCTTCCGGTACCTTCATTCTTTATGCTGCAATCAATGCACTAGCTATATTATTTATAGTTGTAGTGGTGCCAGAAACCAAGGGTAAAAGCCTGGAACAATTACAAGCAGCCATTAACTCGTAG 1401 0.4375 MAKKEDGIREPLVEGLENQLVHASKGHPWMVYFTTFVAVCGSYEFGTCAGYSSPTQDAIRKDLNLSLAEYSLFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSAFCVAGWLVIYFSEGPVPLDIGRLATGYGMGVFSYVVPVFVAEIAPKELRGALTTLNQFMIVAAVSVSFVIGNVLSWRALALTGLIPTSVLLLGLFFIPESPRWLAKRGRHKDFEAALQVLRGKDADISEEAEEIQDYITSLERLPKSKLLELFQRRYLRSVTIGIGLMVCQQFGGINGICFYTSSIFELAGFSPTIGTIIYACLQIVITGIGAAFIDKAGRKPLLLLSGSGLVAGCIFAAVAFYLKVHEVGLAAVPGLVLTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGLAGSMATLVNWFGAWLCSYTFNFLMSWNPSGTFILYAAINALAILFIVVVVPETKGKSLEQLQAAINS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1107 466 Gene3D MFS general substrate transporter like domains 24 466 IPR036259 -
Apr4g1107 466 PANTHER - 27 465 - -
Apr4g1107 466 CDD MFS_GLUT6_8_Class3_like 32 459 IPR044775 GO:0008643|GO:0051119
Apr4g1107 466 TIGRFAM SP: MFS transporter, sugar porter (SP) family 29 459 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr4g1107 466 PRINTS Sugar transporter signature 125 144 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr4g1107 466 PRINTS Sugar transporter signature 277 287 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr4g1107 466 PRINTS Sugar transporter signature 366 387 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr4g1107 466 PRINTS Sugar transporter signature 389 401 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr4g1107 466 ProSitePatterns Sugar transport proteins signature 1. 318 335 IPR005829 GO:0016021|GO:0022857|GO:0055085
Apr4g1107 466 PANTHER SUGAR TRANSPORTER ERD6-LIKE 7 27 465 - -
Apr4g1107 466 ProSitePatterns Sugar transport proteins signature 1. 88 105 IPR005829 GO:0016021|GO:0022857|GO:0055085
Apr4g1107 466 ProSiteProfiles Major facilitator superfamily (MFS) profile. 30 453 IPR020846 GO:0022857
Apr4g1107 466 SUPERFAMILY MFS general substrate transporter 28 460 IPR036259 -
Apr4g1107 466 Pfam Sugar (and other) transporter 40 462 IPR005828 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1107 Apr-Chr4 9338058 9342534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1107 1 465 Organic Solute Cotransporters AT5G18840 57.940 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1107 K03444 - gmx:100785248 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1107 4 9338058 9342534 Apr4g1107 4 9338058 9342534 ECH