Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1093 ATGGCAAATCTCGTGTCATCGTTTTCATTCTCAGTGATTCCTTGGAATCAGCATAAAAACGGAGTTAAATGGTCTTGCTTTCACAAATCATGTGTCCAAAGGAAGCATCATCAACTTGGATTGCAAAACCCCATAAATCCCTTTTCCCAAAATCGAACTTCGAAATTGGGTGCCACATCACGATTGTCTGTTGAAGAAACTGAGCAGCAAGTCACTACCTTGATCCCACCCCAAGACCTAAAAGAAGCATTGGCTTATTTGTTTAGGACAGAAATTGGTGGGGGTTTGGTGAAAGTTTATGTTACAAAGAAAAGAGCTAGTTATTCTGTTTATATTGAGATTTCTTCTTTGGATATGAGTGGTGTTGAGGGTGAAACATTGGTGTTATGTTGGGGTGTCTATAGAGCTGATTCTTCATGTTTGGTGCATCTGGATTCGATGGACGCTGCAACAGGGATGAATTTTAGTCCCTTGATGCAAACTTCTCTTGGCAAGTTTGCAGTTGAATTGGGATTTGATAATAAACATGTTCCCTTGTACTTGTCTTTTTTCTTGATGTCATCCTCGGATGCAGGGTTGGAAATCAGAAGCCATAGGAAAACAAATTTTTGCGTGCCGGTTGGTTCCCTTCCGGGATATCCGGCCCCTCTGGGGCTGTCTTTTTCACCTGACAGGTCTATCAATTTTGCCATTTTTTCGAGACACGCAGAGAGTGTGGTTTTGTGCTTGTATGATGGCACTGGTGTGGAGAAACCTGCTTTAGAGCTTGATCTGGATCCCTATGTCAATAGGTCAGGTGACATATGGCATATCTCATTTGAGAGTGCTGGAACTTTTGTGAGCTATGGTTATCGCTGTAGAGGAGCTCTTCTTCAGCGAAATAAGGATAGTGCTGCTGAGCATATTATTTTGGATCCATATGCTAAGATTATTGGGAATTTTTATCCCAATGATCTTGGATCAGTGAAGAATCTTGGACGTTTGGGGAAGGAACCTGCTTTTGACTGGGGTGATGATTATCGTACTGATTTATCCATGGAAAAACTAGTGGTGTATCGGTTGAATGTCAAGCGCTTTACGCAGCATGTGTCAAGCCAAGTTCCAAGTGATTTAACTGGGACCTTTACTGGTTTAGCTAAAAAGGTGCAGCATTTTAAAGATCTGGGTGTGAATGCTGTTCTGCTGGAACCAGTTTTCACATTTGATGAGAAAAATGGACCATATTTCCCTTGTCATTTTTTCTCTCCAATGCACATTTATGGGCCATCTAGTGGTCCTGTGTCTACTAGCAACTCTATGAAGGAGATGGTTAAAACCATGCATGCCAATGGAATAGAAGTTCTCATGGAAGTTGTTTTCTCCAATACTGCTGACACTGGTGCTCTACAGGGAATTGATGACTTATCCTACTATTATGCAAATGGAGTAAGTAATTTGAAGATACAGAGTGCTTTGAACTGTAACTATCCTATAGTTCAAAATTTGATTCTGGATAGTCTTCGGTATTGGGTAACTGAGTTTCACATTGATGGTTTCTCTTTCATAAATGCTTCACATATGTTGAGGGGATATCATGGAGAATACTTGTCTCGACCTCCATTAGTTGAAGCAATTGCTTTTGATCCTGTACTCTCAAAGACAAAAGTCATTGCAGATTGTTGGGATCCGCATGACTTAGTAATGAAGGAAATTCGCTTTCCTCATTGGATGAGATGGGCTGAAATAAACACTAAATTTTGTAATGATGTGAGAAACTTTCTCAGGGGTGAAAATCTTCTTAGCAACCTTGCAACAAGACTTTGTGGGAGTGGGGACACGTTTTCTGATGGACGAGGCCCTGCATTCTCTTTTAATTACATCGCTAGGAATTTTGGACTTCCTCTTGTGGACTTGGTTAGCTTCAGTAGTGATGAGCTAGCAGCAGAATTAAGTTGGAATTGTGGAGACGAAGGACCTACTAATAACACTGCTGTCCTTGAAAGGCGACTCAAACAAATCCGTAATTTCCTCTTTATCTTGTTCATGTCACTAGGAGTACCTGTTCTGAACATGGGAGATGAGTGTGGTCAGTCTTCCGGTGGTTTGCCTGCAAATGGCGACATAAAACCTTTCAATTGGAGTGCTTTGAAAACAGGTTTTGGTAAACAAATGACACAGTTCATTTCCTTTTTAAGTTCATTGAGAAGGAGACGGAGTGATCTTCTTCAGAGTAGGAGCTTCTTAAAGGAAGAAAACATCGAATGGCATGGAAGTGACCAGGCTCCTCCAAGATGGGAAGACCCATCCAGCAAGTTCTTGGCCATGACTTTGAAGGCTGAAAAATCGGAGTTCCTAGAGAGCTCTGTATCTTCTGATGTATCTGGGGATCTATTTATCGTTTTCAATGCAGCTGATCATCCAGAAACTGTAATTTTACCTCCGCCTCCAGAAGGGATGTCATGGTACCTTTTAGTTGATACTGCTCTTCCATTTCCTGGTTTTTTCTCGACCAGTGGTGAAGTTGTCCCTCAGCAGACAGCAGGTTCGTTTACTTACCAAATGAAGTCTTTCAGTTGCACTTTATTTGAAGCAAACAATCGGTCCATTTAG 2589 0.4137 MANLVSSFSFSVIPWNQHKNGVKWSCFHKSCVQRKHHQLGLQNPINPFSQNRTSKLGATSRLSVEETEQQVTTLIPPQDLKEALAYLFRTEIGGGLVKVYVTKKRASYSVYIEISSLDMSGVEGETLVLCWGVYRADSSCLVHLDSMDAATGMNFSPLMQTSLGKFAVELGFDNKHVPLYLSFFLMSSSDAGLEIRSHRKTNFCVPVGSLPGYPAPLGLSFSPDRSINFAIFSRHAESVVLCLYDGTGVEKPALELDLDPYVNRSGDIWHISFESAGTFVSYGYRCRGALLQRNKDSAAEHIILDPYAKIIGNFYPNDLGSVKNLGRLGKEPAFDWGDDYRTDLSMEKLVVYRLNVKRFTQHVSSQVPSDLTGTFTGLAKKVQHFKDLGVNAVLLEPVFTFDEKNGPYFPCHFFSPMHIYGPSSGPVSTSNSMKEMVKTMHANGIEVLMEVVFSNTADTGALQGIDDLSYYYANGVSNLKIQSALNCNYPIVQNLILDSLRYWVTEFHIDGFSFINASHMLRGYHGEYLSRPPLVEAIAFDPVLSKTKVIADCWDPHDLVMKEIRFPHWMRWAEINTKFCNDVRNFLRGENLLSNLATRLCGSGDTFSDGRGPAFSFNYIARNFGLPLVDLVSFSSDELAAELSWNCGDEGPTNNTAVLERRLKQIRNFLFILFMSLGVPVLNMGDECGQSSGGLPANGDIKPFNWSALKTGFGKQMTQFISFLSSLRRRRSDLLQSRSFLKEENIEWHGSDQAPPRWEDPSSKFLAMTLKAEKSEFLESSVSSDVSGDLFIVFNAADHPETVILPPPPEGMSWYLLVDTALPFPGFFSTSGEVVPQQTAGSFTYQMKSFSCTLFEANNRSI* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1093 862 CDD AmyAc_plant_IsoA 345 736 IPR044096 GO:0019156|GO:0019252
Apr4g1093 862 Coils Coil 724 744 - -
Apr4g1093 862 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 59 860 - -
Apr4g1093 862 SUPERFAMILY (Trans)glycosidases 332 734 IPR017853 -
Apr4g1093 862 SUPERFAMILY Glycosyl hydrolase domain 743 857 - -
Apr4g1093 862 Gene3D - 744 861 IPR013780 -
Apr4g1093 862 Gene3D Immunoglobulins 204 324 IPR013783 -
Apr4g1093 862 CDD E_set_GDE_Isoamylase_N 216 353 IPR044505 -
Apr4g1093 862 SUPERFAMILY E set domains 211 340 IPR014756 -
Apr4g1093 862 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 216 308 IPR004193 GO:0004553|GO:0005975
Apr4g1093 862 Pfam Alpha amylase, catalytic domain 373 460 IPR006047 GO:0005975
Apr4g1093 862 PANTHER GLYCOGEN DEBRANCHING ENZYME 59 860 - -
Apr4g1093 862 Gene3D Glycosidases 330 743 - -
Apr4g1093 862 SMART aamy 353 731 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1093 Apr-Chr4 9224098 9227757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1093 54 859 Glycoside Hydrolase AT1G03310 58.394 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1093 K01214 - gmx:100777953 1377.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1093 4 9224098 9227757 Apr4g1093 4 9224098 9227757 ECH