Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1069 ATGGTGATGAGTGTTCAGCTATCAAACTTGTGGGTCCCCAATTCTCCACCGTTATCTTCTTCTTCTTCTTCACACTTCGTTTCCAACAGAGCAAGATTCTCCCCATCAGCCCTCCCATCTCAATCTCCCACCATTCAGATAGTTGGTGTGAAAGGGCCTAGTTGGAGTGAAAATGGGTACCCAAATCCAAACGGAAATGGGTTTGAAGGGTGGCAAGGACAGAATGATCATTGGAGTGATCTTGACACTGATCTTTATCATTGGACAAAGGCATTACGCCCTGTGCAGTGGTTTCCTGGCCATATAGCAAAAGCAGAAAAGGAACTGAAGGAGCAACTCAAGTTGATTGATGTTGTAATAGAGGTGCGGGATGGACGAATTCCTATGTCAACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTGGTTTTGAATAGAGAAGACATGATATCAACTGCCGACAGAAATGCTTGGGCGGCTTATTTTGCTAGACATGGCACGAAGGTTGTCTTCTCCAATGGGCAGCTCGGAATGGGCACAATGAAGCTAGGCCGGTTAGCCAAGGAATTAGCAGCTGATGTAAATGTTAAGCGTAGATCCAAAGGACTACTTCCTCGTCCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAATCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCCAGGCCAGGAGTCACAAGAGAATTGAAGTGGGTTCGTTTTGGGAAGGATCTTGAACTACTGGATTCTCCTGGGATACTCCCAATGCGAATCAGTGATCAGTCAGCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGGCTTATGATGTGGCTGATGTTGCTGCAATTCTTGTGCAGATGCTTACAAAACTTCCCACAGTAGGTGGAGATGCTCTTTGTAAACGATACAAGATTGATGTTGACAGTAGATGTGGTAAAACATTCATAGAGAAGCTTGCAGTTCAAGTATTTAATGGAAATGTTCATCAAGCCGCATTCCGGGTTCTAGCAGATTTTAGAAAAGGTAAGTTTGGTTGGACTGCACTGGAGAGGCCTCCAAGGTAA 1116 0.4444 MVMSVQLSNLWVPNSPPLSSSSSSHFVSNRARFSPSALPSQSPTIQIVGVKGPSWSENGYPNPNGNGFEGWQGQNDHWSDLDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLIDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWAAYFARHGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERAYDVADVAAILVQMLTKLPTVGGDALCKRYKIDVDSRCGKTFIEKLAVQVFNGNVHQAAFRVLADFRKGKFGWTALERPPR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1069 371 PRINTS GTP1/OBG GTP-binding protein family signature 215 235 IPR006073 GO:0005525
Apr4g1069 371 PRINTS GTP1/OBG GTP-binding protein family signature 261 276 IPR006073 GO:0005525
Apr4g1069 371 Gene3D - 273 361 IPR023179 -
Apr4g1069 371 CDD YlqF 97 268 - -
Apr4g1069 371 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 22 371 - -
Apr4g1069 371 Pfam 50S ribosome-binding GTPase 215 285 IPR006073 GO:0005525
Apr4g1069 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 306 IPR027417 -
Apr4g1069 371 TIGRFAM GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 95 367 IPR019991 -
Apr4g1069 371 Gene3D - 95 268 IPR027417 -
Apr4g1069 371 PANTHER DAR GTPASE 3, CHLOROPLASTIC 22 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1069 Apr-Chr4 8948575 8952586 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1069 K19828 - gmx:100784201 634.409