Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1052 ATGGAAACGGAATCGAAGAAGGAAGTTGAAGTGGCTCCGGCTCTCATCGCCGTTCACCCGGAGGAATGCTCCGTTGCCGTGGCGGTTGGACCGGACCTCCGTGTCTTCGACCTTCTTGATGGTTGTGCAGCTTCTTTAGTAGATGACTCTGGCGGTGATCCTTTCCATAAGGATAACATTAGAGCCATTCGTTTCGGTGCAAAAGGAAAACTCTTCGTATCAGCCGGTGACGATAAAACCCTCAAGATTTGGTCACCGCAATCATGGCGTTGCATTTCTACCGTGTTATCCGAAAAGAGAGTCACTGCAGTTGCCATTAGCAATGATGGAACCTTCGTTTGCTTCGCTGACAAATTCGGCCTTGTGTGGGTTGTTGACCTCGATTCACCGTCGCGTGATAAGAAACCAACTCCACTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCCCCCGATGGTCGTTTTATTTTAAGTGCTGATCGTGATTTCAAAATTCGTGTTACTAATTTTCCCAACAAGCCGTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTTGGTCATACCGAGTTTGTTTCCTGTCTTGCCTTCGTTCAGGCTCTGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGCGGGGATTCTACTGTTCGGTTATGGGATATCACCTCTGGAGCTCTTCTAGATACATGTGAGATTGCAATTAAGGCAGGATTTTTAGAGTCTAATGGCAAAGCAGAGGAGCATAGCCATGCTGTTACTGATATATGCACCATCCTGGATGGTTTACTTGTTGCAGTGGCCATTCAGAGCTTGCGAGGAATAGTATTGTTGAGTTGCAATATTCGTGCACAAACTCTCTCTGTTGCCAAGGTGGTCTCTGTTGTAGGAGAGGCCTTTGTCCCCACCTGCTTGGGGAGCAGCCTCTCCACAGCAAAATTGTGGATGGTTACTGGTGTCTCTAGTTTACCTGGTTGCAATTGCCCATCTTTGGCTCGTGTCCGAGTAATTTCTGGGATTGATGTTGAGCAAGAGTCAGTTGTTCTGGGAGATGATAACATACCTGGGGGAGAAAAGCTGCTAGAAACGTTGCAAGGAACTGCATCCATTGATGACAATGCATTTTTAGCGGCAGCAGAAGCCGTCAAAACAGCAATGTGCAACCTATTAATAAAAAAACAATACCCTGCAGAAAATAGAGAAACTAGGAAGAAGACCAGAAATGATAGAAAACTCAAGGGCTAG 1254 0.4609 METESKKEVEVAPALIAVHPEECSVAVAVGPDLRVFDLLDGCAASLVDDSGGDPFHKDNIRAIRFGAKGKLFVSAGDDKTLKIWSPQSWRCISTVLSEKRVTAVAISNDGTFVCFADKFGLVWVVDLDSPSRDKKPTPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNFPNKPLNGAHQIQSFCLGHTEFVSCLAFVQALECPQGLLLSGSGDSTVRLWDITSGALLDTCEIAIKAGFLESNGKAEEHSHAVTDICTILDGLLVAVAIQSLRGIVLLSCNIRAQTLSVAKVVSVVGEAFVPTCLGSSLSTAKLWMVTGVSSLPGCNCPSLARVRVISGIDVEQESVVLGDDNIPGGEKLLETLQGTASIDDNAFLAAAEAVKTAMCNLLIKKQYPAENRETRKKTRNDRKLKG* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1052 417 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Apr4g1052 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 94 IPR001680 GO:0005515
Apr4g1052 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 233 IPR001680 GO:0005515
Apr4g1052 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 228 - -
Apr4g1052 417 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
Apr4g1052 417 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Apr4g1052 417 Pfam WD domain, G-beta repeat 141 170 IPR001680 GO:0005515
Apr4g1052 417 SMART WD40_4 88 126 IPR001680 GO:0005515
Apr4g1052 417 SMART WD40_4 39 85 IPR001680 GO:0005515
Apr4g1052 417 SMART WD40_4 133 172 IPR001680 GO:0005515
Apr4g1052 417 SMART WD40_4 180 224 IPR001680 GO:0005515
Apr4g1052 417 Gene3D - 54 294 IPR015943 GO:0005515
Apr4g1052 417 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 22 409 IPR028884 GO:0036265
Apr4g1052 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 85 - -
Apr4g1052 417 SUPERFAMILY WD40 repeat-like 55 273 IPR036322 GO:0005515
Apr4g1052 417 PANTHER WD40 REPEAT PROTEIN 4 14 414 IPR028884 GO:0036265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1052 Apr-Chr4 8720257 8723042 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1052 K15443 - gmx:100786310 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1052 4 8720257 8723042 Apr4g1052 4 8720257 8723042 ECH