Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr4g1048 | ATGCTTGCAATACGAAAGCTCAAAACAGGACCTGATTTCCCTTTTGTTTTATGTGTCATGGTTGCTAATTGCAATTATGGCACAGCTCAAGTTTTCAATAACAGAAGTGTCCAGTTTATTGCAAAGTCTGTTAGCCCTTATTTAGCCAACTCATGTTCGCAAGCATTTCTGCTGGGATCAGAGAATAAATTTACTTTTCAAGGACGATATTTCTCTAGTGTGGCCGAAAGAATCCTAGTCCAGGCTCGAGACCCAGCCAAAGTTAGTTTGGAAATTCTAAATGCTATCAGTGCGAATCAATTAGATTATTCATGGAAATTATTTGAACAGCATATGCACATGGAGGGATTTCCCAGAAAATCTGTTGTCAGCAAGCTGGTAACAAGTTATGTGGACAGCCTTGATAAGCAATGGCTGGGAAGAGCTTACGAATTGGTGGAACGTGCTATTGAGGAAGGTAAACAAGACTTGTTAGAAAAAGAGGTGCTTATCTACCTTAGCTTTGGCCTTGCAAAAGCTGGACTACCAGTTCCTGCATCAACCATTTTAAGAAAGATTATAGACATGGAGCATTTCCCCCCAGTCACTGCTTGGTCTGCAGTTTTGGCACACATGTCTCAAACAGCAGATGGAAGTTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTGTTCCAAAACAATAGAGTAGATCCACGTAAAAAGAGCAATGCCCCTCTGATAGCCATGAAGCCAAATACTGCTGCTTTTAGCATTGCTTTGGCAGGGTGTCTCTTATTTGAGACATCTAGGAAGGCAGAGCAGCTTCTAGATATGATGCCTCGAATCGGTGTGAAAACTGATTCAAACTTACTGATAATAATGGCCAGTGTGTATGAGACTAATGGCCGAAGAGAAGAGCTCAAGAAGCTGCAAAGACATATAGAGGAAGCTCCAAATCTAACTGATTTACAGTTCCGACAGTTCTATAATTGTTTGCTGACATGCCATCTGAAATTTGGGGATCTAGATTCTGCCTCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCCCTTGCAGGTGCCAAATTTATGATAAATGCTACTGAAATTGATCATAACTATTCTCCAGGACTGGCTTCTGTGCCTAGTTTCAACAACAGTAAAGGTTTAGATAGTTTAGAGAATAACAGGCCACTTAGAAATGCTGTATTTTCGTATGAGGAGTTCTCTAAAGATAGAAACTTCTCAAAACTTCAAGCAGAGTCAAATATCGTACTTGGTTCTTTATTAGCTAAGTTGCAGACACAGGTGGACTTGATTACAACCAAACATGGTATACTGCAACCTACTGAAACAATTTATGTGAAATTAGTTAAAGCTTTTCTAGAAGCTGGCAAGACCAAGGATTTAGCAGATTTTCTTCTCAAGGCCGAAAGAGAAGATTCCCCATTTTCCAATGACAATTCCACCTTGGTTCGTGTTATTAATTCATGCATTTCACTTGGATGGCTGGATCAGGCACATGATCTCCTTGACGAGATGCGTCTAGCTGGAGTTAGAACTGGTTCATCTGTATATGCCTCTCTTCTTAAAGCATATTGTCGAGCAAATAGGGCTGCAGATGTCAAATCACTTCTGAGAGACGCTAGAAAAGCTGGTATTCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGGGTGCTCCAGCAAGACACACAAGGAGCACTCCAACTATTTAAAGAGATGAAAGGAGCTAGAATTCCAAAGGTCACTCAACAAAACTCTTGTATGCTGGCTAAAAGTGGCGCAGAATCAGATAAAGCTGAGCTAATGACCGAGCTGTTGCAGGAAATCAAGGAAGGACAGAGAGTGGATTATGGAGTTCATGATTGGAATAACGTAATCCATTTTTTTTGTAAGAAGAGACTAATGCAAGATGCAGAAAAGGCTCTAAAGAAGATGAGAAGCTTAGGCCACTTCCCAAATGCGCAAACTTTCCATTCTATGGTTACTGGGTATGCTGCAATTGGAGGGAAATATCAAGAGGTAACAGAGCTGTGGGGTGAGATGAAAGCTCTTGCTTCTTCTATCTCCATGAAGTTTGATCAGGAACTTCTCGATTCCGTGCTGTATACATTTGTGAGGGGTGGATTCTTTGTTCGAGCCAATGAAGTTGTGGCAATGATGGAAAAAGGAAACATGTTTGTTGACAAGTACAAGTACCGAATGCTATTCTTGAAATATCATAAAACACTTTACAAAGGCAAGTCTCCGAAATTTCAAACAGAATCCCAACTAAACAAAAGGGAAGCAGTCCTGGCTTTCAAAAGGTGGATAGGCTTGACTTGA | 2355 | 0.4059 | MLAIRKLKTGPDFPFVLCVMVANCNYGTAQVFNNRSVQFIAKSVSPYLANSCSQAFLLGSENKFTFQGRYFSSVAERILVQARDPAKVSLEILNAISANQLDYSWKLFEQHMHMEGFPRKSVVSKLVTSYVDSLDKQWLGRAYELVERAIEEGKQDLLEKEVLIYLSFGLAKAGLPVPASTILRKIIDMEHFPPVTAWSAVLAHMSQTADGSYLAAELILEIGYLFQNNRVDPRKKSNAPLIAMKPNTAAFSIALAGCLLFETSRKAEQLLDMMPRIGVKTDSNLLIIMASVYETNGRREELKKLQRHIEEAPNLTDLQFRQFYNCLLTCHLKFGDLDSASNMVLEMLRKAKEARNSLAGAKFMINATEIDHNYSPGLASVPSFNNSKGLDSLENNRPLRNAVFSYEEFSKDRNFSKLQAESNIVLGSLLAKLQTQVDLITTKHGILQPTETIYVKLVKAFLEAGKTKDLADFLLKAEREDSPFSNDNSTLVRVINSCISLGWLDQAHDLLDEMRLAGVRTGSSVYASLLKAYCRANRAADVKSLLRDARKAGIQLDSSSYEAMIQSRVLQQDTQGALQLFKEMKGARIPKVTQQNSCMLAKSGAESDKAELMTELLQEIKEGQRVDYGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHFPNAQTFHSMVTGYAAIGGKYQEVTELWGEMKALASSISMKFDQELLDSVLYTFVRGGFFVRANEVVAMMEKGNMFVDKYKYRMLFLKYHKTLYKGKSPKFQTESQLNKREAVLAFKRWIGLT* | 785 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr4g1048 | 784 | Gene3D | Tetratricopeptide repeat domain | 573 | 773 | IPR011990 | GO:0005515 | |
| Apr4g1048 | 784 | Gene3D | Tetratricopeptide repeat domain | 92 | 374 | IPR011990 | GO:0005515 | |
| Apr4g1048 | 784 | Pfam | PPR repeat family | 631 | 676 | IPR002885 | - | |
| Apr4g1048 | 784 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 629 | 663 | IPR002885 | - | |
| Apr4g1048 | 784 | Pfam | PPR repeat | 494 | 519 | IPR002885 | - | |
| Apr4g1048 | 784 | Pfam | PPR repeat | 324 | 350 | IPR002885 | - | |
| Apr4g1048 | 784 | PANTHER | BNAC05G43320D PROTEIN | 15 | 783 | - | - | |
| Apr4g1048 | 784 | Gene3D | Tetratricopeptide repeat domain | 384 | 572 | IPR011990 | GO:0005515 | |
| Apr4g1048 | 784 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 522 | 556 | IPR002885 | - | |
| Apr4g1048 | 784 | PANTHER | OS10G0422566 PROTEIN | 15 | 783 | - | - | |
| Apr4g1048 | 784 | TIGRFAM | PPR: pentatricopeptide repeat domain | 525 | 557 | IPR002885 | - | |
| Apr4g1048 | 784 | TIGRFAM | PPR: pentatricopeptide repeat domain | 633 | 665 | IPR002885 | - | |
| Apr4g1048 | 784 | Pfam | Pentatricopeptide repeat domain | 544 | 589 | IPR002885 | - | |
| Apr4g1048 | 784 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 487 | 521 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr4g1048 | Apr-Chr4 | 8696305 | 8699865 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr4g1048 | 449 | 700 | Miscellaneous Gene Families | AT4G11690 | 26.562 | 1.04e-16 | 82.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr4g1048 | - | - | gmx:102661989 | 1340.87 |
Event-related genes