Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1018 ATGCAACACTTCCACCCCTACCACCACATCGCCGCCGCCGCCACCTCCACCATCTCTGCAGATGTAAAACGCGCCAAGAAGCGCGGCAGCTACAACTGTGGCCGCTGTGGTCTCCCCAAAAAGGGTCATGACTGCAACGTCAAGACCCCCACCTCCGCTTCTTCCACCACCCCTTCCCATTCTTCTCTCTCCTCCGCCTCCGCCGTCCATCAGCCGCCGTCGCACCTCCGCCGGGCACTCTCCTTCGACGACGATGCTGCCGGCCTCGATCCGTTGGAGCCCGCGGATTCAGAAACCGGATATGTGGATCTGGATTCGTGTGGGTTGCCGGCGAACCTTCTTTGGGAGGTGCTGAGGAGGTTGCCGCCGGCGAGGCTGTTAACGGCGGCGAAAGTGTGCAGGTGTTGGAGGGAAACGACTCGGAGGTTGTGGAGGGCGGCGGAGGAGTTGAAGCTTAGGGTTTCAGCGAGGGTTCAGGTTGGGTTTGTGGCGTCAATGTTGCAGAAGTGCCCGGGGATTGTGAAGCTCTCTCTTAGAATGGAAAGTGACGTGGATTCGACGATGCTGGCTTGCATAGCATTCTCATGCCCGAATTTGGAATTCATGGAGATCGCGGTTTCTGATACTGCAGTTAATCGGATCAATGGAGATGAGCTAAGTCGATTTGTTGCCGATAAAAAATGCCTCAAAAGCCTCAAGATGGAAGGTTGTTCTAATCTTGGGGGTTTTGTTCTTTGCTCGTCCAGTCTTTCTACCCTTTGGCTGTCTGATTTGTGCTCACTTTCTAAGATGGTATTTAATTGTCCTCAGTTGAGAGAGATTTCGTTGGAGTTTTCTCACCAAGAAAATGAAAGTACCGATCTCACAGCTATGGTTGACGGTTTGGGAAGAAGTTGCCCGAGGTTGCAAAACATGCATATATCTTCAATGCGGCTTTCTCACGCTGCAGTGCTTGCTCTTACTGCTAATCAGTTAAGGGGGCTGCGGATGCTTTCACTTGTTCTTGGATCTGAAATTAGCGATGCATCTGTTGCTGCTATTGCCTCAAGTTATCCAAATTTGGAATTGCTTGATCTCAGTGGGTCCGGCGTTAGTGACAGTAGCATTGGAATAATTTGCAATGGGTTATCTGAAACATTGACCAGACTCCTTCTCGCTCTTTGCCCTAATGTTACTTCAAGCGGCATTCAATTTGCTACGGCTCAATTGCCGCATCTTGAACTTCTGGACTGTGGCATGACCATATGTGAACCTAATTCCCACAATCCAACTGCTGATGAAAATAACTGCAAATTAGAGAAAACATCGGTTACTAATCCACACTTCACAAACCAAAAGCTAATCATCAAACATAGTCGTTTAAAGAAACTTAGTTTATGGGGATGCACTGGCTTGGATGCCTTGTATTTAAACTGCCCACAACTCAATGATCTGAATCTAAATTCCTGTAGAAATTTGCATCCAGAGAGACTGTTGCTTCAGTGCCCAACTTTAGAAAACGTGCATGCATGTGGTTGTCAGGATATGTTAGTTGGAGCTATCCAAAGTCAGGTCTGTAATGCTTTTACTGCTATGGAGAACCTTTCACCTTATAAACGTTTACCTGATGGCTCCAAAAGGGTTCGGGTTCCTCATTTAGTCAATAGCGAGTCGATCGAGGATGAAAAGAAGCGAAGGAGAATTGAGAGACGGCTTTGTAATGTAGTTGTGGATTGA 1716 0.4819 MQHFHPYHHIAAAATSTISADVKRAKKRGSYNCGRCGLPKKGHDCNVKTPTSASSTTPSHSSLSSASAVHQPPSHLRRALSFDDDAAGLDPLEPADSETGYVDLDSCGLPANLLWEVLRRLPPARLLTAAKVCRCWRETTRRLWRAAEELKLRVSARVQVGFVASMLQKCPGIVKLSLRMESDVDSTMLACIAFSCPNLEFMEIAVSDTAVNRINGDELSRFVADKKCLKSLKMEGCSNLGGFVLCSSSLSTLWLSDLCSLSKMVFNCPQLREISLEFSHQENESTDLTAMVDGLGRSCPRLQNMHISSMRLSHAAVLALTANQLRGLRMLSLVLGSEISDASVAAIASSYPNLELLDLSGSGVSDSSIGIICNGLSETLTRLLLALCPNVTSSGIQFATAQLPHLELLDCGMTICEPNSHNPTADENNCKLEKTSVTNPHFTNQKLIIKHSRLKKLSLWGCTGLDALYLNCPQLNDLNLNSCRNLHPERLLLQCPTLENVHACGCQDMLVGAIQSQVCNAFTAMENLSPYKRLPDGSKRVRVPHLVNSESIEDEKKRRRIERRLCNVVVD* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1018 571 MobiDBLite consensus disorder prediction 47 70 - -
Apr4g1018 571 Gene3D Ribonuclease Inhibitor 426 529 IPR032675 -
Apr4g1018 571 Gene3D Ribonuclease Inhibitor 101 288 IPR032675 -
Apr4g1018 571 SUPERFAMILY F-box domain 108 147 IPR036047 GO:0005515
Apr4g1018 571 MobiDBLite consensus disorder prediction 44 70 - -
Apr4g1018 571 Pfam F-box domain 109 142 IPR001810 GO:0005515
Apr4g1018 571 PANTHER F-BOX/LRR-REPEAT PROTEIN 17-LIKE ISOFORM X1 23 570 - -
Apr4g1018 571 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 23 570 - -
Apr4g1018 571 SMART LRR_CC_2 472 495 IPR006553 -
Apr4g1018 571 SMART LRR_CC_2 351 375 IPR006553 -
Apr4g1018 571 SMART LRR_CC_2 299 323 IPR006553 -
Apr4g1018 571 SMART LRR_CC_2 325 350 IPR006553 -
Apr4g1018 571 SUPERFAMILY RNI-like 165 510 - -
Apr4g1018 571 Gene3D Ribonuclease Inhibitor 289 416 IPR032675 -
Apr4g1018 571 ProSiteProfiles F-box domain profile. 103 147 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1018 Apr-Chr4 8376021 8380527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1018 - - gmx:100811082 825.854