Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0658 ATGGCGATGGCATTTGAAACGAGTCGCTTTTGTCTATCGCGCCCAACCACTTCAACACACTTCTTCTTCTCATCCAATCTCAAACCACTCAAACCTATTTCGCTTCCTTCTCGATTCTTCCATTGCCGATCGAAACGCCTCGTTTTGATGCCGAGACTTGTGGTAAAAGCTTGCGCGGTGAACGTTGAGGAGAAGAATGTCGCATCAGGAAAAGGAGGAGAAGCTTGGGGGAATGTTTCTGCAGTGTTGTTTGACATGGACGGTGTGCTCTGCAACAGCGAAGAGCCTTCTAGAAGAGCCGCCGTCGATGTGTTCGCTGAGATGGGCGTCCAAGTCACCGTCGAAGATTTTGTGCCGTTCATGGGAACCGGGGAAGCAAACTTTTTGGGAGGGGTTGCTTCTGTTAAAGGAGTTAACGGATTTGATCCTGATGCTGCAAAAAAGAGGTTCTTTGAAATATATTTAGATAAGTATGCAAAACCAGATTCTGGAATAGGATTTCCAGGTGCCCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGGCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGCATAAAGGTTGATGCAAATTTAGCTGCTGCGGGTTTACCATTGTCATTGTTTGACGCGATTGTCTCAGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCCAGAATATTGAATGTGCCCCCCAGTGAGTGTATTGTTATAGAAGATGCACTAGCTGGAGTGCTAGCTGCCAAAGCTGCACAAATGAGATGCATAGCTGTAAGGACCACATTATCAGATGAGGCTTTGGAATCTGCTGACCCAGCACTTATCCGTGATGACATAGGAAATGTTTCACTTGATGATATTCTCAGTGGTGGCTCTATTGGATATAATAAGAGGATGCAGGGCTCTGAAACACTAAATAATTCTCCGCAATCTTCGTCTGACGTGCTTGCTGCAAAAACTACCGGGGAACATAATGGAATTTTCTCAACTGGAGGGTTTCAGGGTTCTCGGCGAGATATACTGAGATTTGGTAGTCTGGGCATAGCTATCTCTTGCCTTGTCTTCACCTTAAGTAACTGGAAGGCTATGCAATATGCTTCCCCTAAAGCTGTTTGGAATCAATTGTTTGGTGTTACCCAGCCTCCAATAGATAACTCAAGATATGATAGGATCCAACAATTTGTGAACTACATATCTGATCTGGAAAGCAGGGGAAATATGCAAATTGTTCCAGAATTTCCGTCTAAACTTGATTGGTTCAATACAGCTCCGCTTCAGTTTCGCAGGGACCTGAAAGGGAAAGTTGTGCTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCCAGACCTAGATGTTTTGGAGAAAAAATACAAAGATATGCCGTTCGTTGTTGTGGGTGTTCATTCTGCAAAGTTTGATAATGAGAAAGATTCTGAAGCCATTCGCAATGCAGTTCTACGCTATGGCATCACTCACCCAGTTGTCAATGACGGAGACATGTATCTTTGGCGGAAGTTGGGTGTAAATTCATGGCCAACATTTGCTATTGTTAGCCCCAATGGTAAGCTCCTTGCACAACTTGCAGGAGAGGGTCACAGAAAGGTTGTTACTGATCTTGATGGGAATTTTATTCTACAAATTGGGAGTAGTGGGGAGGAAGGATTGCAGGATGGTTCCTTTGATGATGCCACCTTTAACCGCCCTCAGGGCCTTGCTTATAATGCAAAGAAAAATATCCTTTATGTTGCTGACACCGAAAACCATGCTTTGAGGGAAATTGATTTTGTTAATGAGAAAGTGCGGACTCTTGCTGGAAATGGGACCAAGGGAACCGATTATATAGGAGGAGGAAAAGGAGATACTCAGCTCCTCAATTCCCCTTGGGATGTCTGCTTTCATCCATTTGAAGAAAAAATTTATATTGCCATGGCTGGCCAACATCAGATTTGGGAGCACAATTTATTGGATGCAACTACGAGAGCATTTAGTGGTGATGGTTATGAAAGAAATTTAAATGGATCAAGTTCTTCAAGCACATCATTTGCACAACCTTCTGGTCTTTCATTGTCTCAAGACCTAATGGAGATCTACATTGCTGATAGTGAGAGTAGTTCAATTCGAGCTCTTGATCTGAAAACAGGAGGATCTCAGTTGTTAGCTGGTGGTGATCCAATTTTCCCTGAAAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCCAACATACTTCTTCAACATCCACTGGGAATTATGTGTGGAAGTGATGGTGAAGTCTATATCACAGATAGCTACAATCACAAGATCAAGAAGCTAGATCCAACTAGTAAAAGAGTTAGCACCATTGCAGGGACAGGAAAAGCTGGTTTCAAAGATGGAACAGCTGTAAAAGCTCAGCTTTCTGAACCGTCAGGAATTGTTGAAGGGAAGAATGGGAGACTATTCATAGCGGATACAAACAACAGCTTAATCCGATATCTAGATTTGAACACTGGTGAAATTGAACTCCGTACCTTGGAGCTTAAAGGGATTCAGCCTCCTAAACCAAAATCAAGATCTTTTAAACGTCTTAGAAGACGACCATCAGCTGACACGGTGCCAATTACCGTTGATGCCATTTCATCAAATGAGGGAAACTTGTCCATTCAAATATCATTACCGAATGAGTATCATTTCTCAAAGGAAGCACGCAGTAGATTCAGCGTGGATATTGAACCTGAAGATGCTGTGAACATTGATCCCGTCGATGGACTTCTTAGTCCAGAAGGATCTGCAACCCTTCACTTTAAGAGATCCTCTAACACTGCTTCAATTGGAAGAATTAATTGCAAGATTTACTTTTGCAAGGAAGATGAAGTTTGTTTGTACCAGTCGGTGCTATTTGAGGTCCCCTTCCGAGTGGGAGCTTCAAACTCTGCCAGTCCAGACGTCACTCTTGCACATTTTGTGAAACCCAAAACTTCAACCAACAGCTTACTGCAGCCAGTTGTACCGTGA 3033 0.4286 MAMAFETSRFCLSRPTTSTHFFFSSNLKPLKPISLPSRFFHCRSKRLVLMPRLVVKACAVNVEEKNVASGKGGEAWGNVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVQVTVEDFVPFMGTGEANFLGGVASVKGVNGFDPDAAKKRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRIKVDANLAAAGLPLSLFDAIVSADAFENLKPAPDIFLAASRILNVPPSECIVIEDALAGVLAAKAAQMRCIAVRTTLSDEALESADPALIRDDIGNVSLDDILSGGSIGYNKRMQGSETLNNSPQSSSDVLAAKTTGEHNGIFSTGGFQGSRRDILRFGSLGIAISCLVFTLSNWKAMQYASPKAVWNQLFGVTQPPIDNSRYDRIQQFVNYISDLESRGNMQIVPEFPSKLDWFNTAPLQFRRDLKGKVVLLDFWTYCCINCMHVLPDLDVLEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGITHPVVNDGDMYLWRKLGVNSWPTFAIVSPNGKLLAQLAGEGHRKVVTDLDGNFILQIGSSGEEGLQDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLAGNGTKGTDYIGGGKGDTQLLNSPWDVCFHPFEEKIYIAMAGQHQIWEHNLLDATTRAFSGDGYERNLNGSSSSSTSFAQPSGLSLSQDLMEIYIADSESSSIRALDLKTGGSQLLAGGDPIFPENLFKFGDQDGIGSNILLQHPLGIMCGSDGEVYITDSYNHKIKKLDPTSKRVSTIAGTGKAGFKDGTAVKAQLSEPSGIVEGKNGRLFIADTNNSLIRYLDLNTGEIELRTLELKGIQPPKPKSRSFKRLRRRPSADTVPITVDAISSNEGNLSIQISLPNEYHFSKEARSRFSVDIEPEDAVNIDPVDGLLSPEGSATLHFKRSSNTASIGRINCKIYFCKEDEVCLYQSVLFEVPFRVGASNSASPDVTLAHFVKPKTSTNSLLQPVVP* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0658 1010 Pfam NHL repeat 577 602 IPR001258 GO:0005515
Apr4g0658 1010 Pfam Haloacid dehalogenase-like hydrolase 82 265 IPR041492 -
Apr4g0658 1010 ProSiteProfiles NHL repeat profile. 757 787 IPR001258 GO:0005515
Apr4g0658 1010 SUPERFAMILY NHL repeat 517 845 - -
Apr4g0658 1010 SUPERFAMILY HAD-like 67 291 IPR036412 -
Apr4g0658 1010 SFLD Haloacid Dehalogenase 79 284 - -
Apr4g0658 1010 Gene3D - 546 609 IPR011042 -
Apr4g0658 1010 ProSiteProfiles Thioredoxin domain profile. 411 561 IPR013766 -
Apr4g0658 1010 CDD NHL-2_like 559 900 IPR045302 -
Apr4g0658 1010 CDD HAD_BPGM-like 81 267 - -
Apr4g0658 1010 SUPERFAMILY Thioredoxin-like 416 546 IPR036249 -
Apr4g0658 1010 Gene3D Putative phosphatase; domain 2 92 163 IPR023198 -
Apr4g0658 1010 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 544 1006 - -
Apr4g0658 1010 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 185 547 - -
Apr4g0658 1010 Pfam Thioredoxin-like 440 534 IPR012336 -
Apr4g0658 1010 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 79 284 - -
Apr4g0658 1010 Gene3D - 81 278 IPR023214 -
Apr4g0658 1010 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 79 90 IPR006439 -
Apr4g0658 1010 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 177 190 IPR006439 -
Apr4g0658 1010 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 209 225 IPR006439 -
Apr4g0658 1010 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 227 247 IPR006439 -
Apr4g0658 1010 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 206 265 IPR006439 -
Apr4g0658 1010 Gene3D - 741 840 IPR011042 -
Apr4g0658 1010 Gene3D - 644 740 IPR011042 -
Apr4g0658 1010 Gene3D Glutaredoxin 411 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0658 Apr-Chr4 5419797 5440128 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0658 - - gmx:100795843 1229.54