Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0626 ATGAAAATTGCGTTGCCAATAAGAAAGGTTGTGAGAAGAGAAAGCAGAAAGTATTATGAATTGTCCTCAATCGATCACTTAAACTATATCCTCAGCAATTCATCACAGTTGAAGAATCTAAAACACGTGACACAAATCCACTCTCAAATCATAACAACTAATAACGCTTCCCTTCCCAACGTGAACAACCTTCTTCTTCTGTACGCAAAATGCGGTTCCCTCCATCATACCCTTCTCGTTTTCTCCACAACCCCTCACAATGTCCTCACGTGGACCACCCTCATCACCCAACTCAACCGTTTCAACCAACCCTTCCGTGCCATAACCTATTTCAACCGCATGAGGACCACTCACACGTACCCAAACCAATTCACCTTCTCCGCCATCTTACCCGCGTGTGCGCAAACAACGCTTCTTCCCTATGGTCAGCAAATCCACGCTTTGATTCATACACATGGTTTTCAAACCGACACGTTTGTAGCTACCGCGTTACTTGACATGTACGCTAAGTGTTCCTCCATGTCCTTGGCAGAGAAGGTGTTCGACCAAATGCCCCACAGAAACCTCGTTTCGTGGAATTCTATGATTGTCGGATTCTTGAAAAACAAGTTGTTCGGTCGTGCCATTCGGGTTTTTCGAGAGGTTCTCCGCCAGACTTGGTTTGCTCCCGATCAAGTGAGTTTCTCCAGCGTGTTGAGTGCTTGTGCTGGTTTGGTTGATTCGGGTTTTGGGAAGCAGGTGCATGGGAGCATTGTTAAGCGTGGTTTGGTTGGTGTGGTTTACGTGAACAACTCCCTGGTGGACATGTACTGTAAATGCAGGATGTTTGATGATGCAGCCAAGTTGTTCTATGCTGCTGGATATAGAGATGTTGTGACCTGGAATGTGATGATTGCTGGTTGTGTTGGTGACGATAACTTCGAACAAGCTTGCAGCTTTTTCCAAGCTATGAAAAGGGAAGGCATGGTACCCGATGAGGCTTCTTACTCCTCTGTTCTTAACGCGATTGCATGTATTGCAGCATTGACACAGGGCACCTTGATCCATGGTCATGTATTAAAAACTGGCCACATGAAAAATGCTTGTGTTTCATGTTCTTTGGTGACTATGTATGGCAAATGTGGGAACTTGTTTGATGCCTATCGGGTTTTTCAAGAGACAAAGGATCGTAATGTGGTTTGTTGGACAGCTATGATCGCGGTTTTTCATCAACATGGTTGCGCTGATGAAGCGATTGAGTTGTTTGAGGAGATGCTTAAAGAGGGGATTGTGCCTGAGTACATTACTTTTGTTTCCGTGCTATCGGCTTGCAGCCATACGGGGCAGGTTGATGATGGTTTCAAGTATTTCAATTCCATGGCTAACATCCATAACGTTGAGCCTGGACCTGAACATTATGCCTGCATGGTAGACTTGCTTGGTCGTGTTGGTCGATTGGATGAAGCGTGGAGCTTTATTGAATCGATGCCAATCGAGCCTGACTCATCAGTTTGGGGGGCTTTGCTTGGGGCATGTGGCAAGTATGGCAGTGTTGAAATGGGCAGAGAAGTTGCAGAGAGGCTTTTCAAGTTGGAACCAGATAATCCAGGGAACTATGTGTTACTTTGTAATATCTATACACGACATGGGATGTTGGGAAAAGCCGATGAGGTCAGGAGATTGATGGGGATCAATGGGGTGAGGAAAGAGACTGGATGTAGCTGGATTGATGTTAAGAACAGGACCTTTGTGTTCACTGTGAATGATAGGTCACACTCAAGAACAGAAGAGATTTATGAAATGTTGCAAAAGTTGAAAGAGTTGATAAAGAAGAGAGGCTATGTAGCTGAGACCCAGTTTGCAACTAACAGTGTTGAAGGGTCTGAAGAGCAGAGTCTGTGGTGTCACAGCGAGAAATTAGCTCTTGCATTTGGTCTTCTGGTCCTTCCAGTTGGGTCTCCAGTAAGGATAAAGAAGAATTTGAGAACTTGTGGTGATTGTCATACTGTTATGAAATTTGCTTCAGAGATTTTTCAGAGAGAAATTATTGTGAGAGATATCAACAGGTTTCATCGATTCACAAATGGCTTGTGCTCTTGTAGAGATTATTGGTGA 2094 0.4446 MKIALPIRKVVRRESRKYYELSSIDHLNYILSNSSQLKNLKHVTQIHSQIITTNNASLPNVNNLLLLYAKCGSLHHTLLVFSTTPHNVLTWTTLITQLNRFNQPFRAITYFNRMRTTHTYPNQFTFSAILPACAQTTLLPYGQQIHALIHTHGFQTDTFVATALLDMYAKCSSMSLAEKVFDQMPHRNLVSWNSMIVGFLKNKLFGRAIRVFREVLRQTWFAPDQVSFSSVLSACAGLVDSGFGKQVHGSIVKRGLVGVVYVNNSLVDMYCKCRMFDDAAKLFYAAGYRDVVTWNVMIAGCVGDDNFEQACSFFQAMKREGMVPDEASYSSVLNAIACIAALTQGTLIHGHVLKTGHMKNACVSCSLVTMYGKCGNLFDAYRVFQETKDRNVVCWTAMIAVFHQHGCADEAIELFEEMLKEGIVPEYITFVSVLSACSHTGQVDDGFKYFNSMANIHNVEPGPEHYACMVDLLGRVGRLDEAWSFIESMPIEPDSSVWGALLGACGKYGSVEMGREVAERLFKLEPDNPGNYVLLCNIYTRHGMLGKADEVRRLMGINGVRKETGCSWIDVKNRTFVFTVNDRSHSRTEEIYEMLQKLKELIKKRGYVAETQFATNSVEGSEEQSLWCHSEKLALAFGLLVLPVGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGLCSCRDYW* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0626 697 Pfam PPR repeat 162 188 IPR002885 -
Apr4g0626 697 Pfam PPR repeat 466 489 IPR002885 -
Apr4g0626 697 Pfam PPR repeat 190 216 IPR002885 -
Apr4g0626 697 Pfam PPR repeat 264 283 IPR002885 -
Apr4g0626 697 Pfam PPR repeat family 390 438 IPR002885 -
Apr4g0626 697 Pfam PPR repeat family 289 336 IPR002885 -
Apr4g0626 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Apr4g0626 697 PANTHER OS07G0578800 PROTEIN-RELATED 17 690 IPR045215 GO:0003723|GO:0009451
Apr4g0626 697 Pfam Pentatricopeptide repeat domain 87 134 IPR002885 -
Apr4g0626 697 SUPERFAMILY TPR-like 362 548 IPR011990 GO:0005515
Apr4g0626 697 Pfam DYW family of nucleic acid deaminases 606 697 IPR032867 GO:0008270
Apr4g0626 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Apr4g0626 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Apr4g0626 697 TIGRFAM PPR: pentatricopeptide repeat domain 190 224 IPR002885 -
Apr4g0626 697 TIGRFAM PPR: pentatricopeptide repeat domain 393 425 IPR002885 -
Apr4g0626 697 TIGRFAM PPR: pentatricopeptide repeat domain 292 326 IPR002885 -
Apr4g0626 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 690 - -
Apr4g0626 697 Pfam E motif 508 570 IPR046848 -
Apr4g0626 697 Gene3D Tetratricopeptide repeat domain 364 573 IPR011990 GO:0005515
Apr4g0626 697 Gene3D Tetratricopeptide repeat domain 246 344 IPR011990 GO:0005515
Apr4g0626 697 Gene3D Tetratricopeptide repeat domain 7 140 IPR011990 GO:0005515
Apr4g0626 697 Gene3D Tetratricopeptide repeat domain 141 245 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0626 Apr-Chr4 5193004 5195097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0626 87 697 Glycoside Hydrolase AT3G49170 39.516 3.25e-159 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0626 - - ccaj:109797249 1125.15