Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0621 ATGAAGCTTGAAGGCTCGCTTCTACTCTTGACTCTTGCTTTGGTGTTAACCACCCCCGCTGCATCAGATCCTGATCCTCTTCAAGACATCTGTGTGGCAGACCCTGCCTCAGGGGTTAAAGTGAATGGATTCACCTGCAAGGATGCTGCCAAGGTAACTCCGTCTGATTTCTTCTCAGACATATTAGCCAAACCGGGTGCCACAAACACCACCTATGGTTCCATAGTGACAGGAGCCAACGTTGAGAAAATCCCAGGATTGAACACACTTGGAGTGTCTTTGTCACGCATTGACTATGCCCCAGGAGGGTTGAACCCACCTCACACACACCCACGTGCCACAGAAATAGTGTTTGTGCTTGAAGGGCAACTAGATGTTGGGTTCATAACCACAGCCAATGTGTTCATATCAAAGACCATCTACAAGGGTGAGATATTTGTGTTCCCAAAAGGCTTAGTTCACTTCCAAAAGAACAATGCAAAGGAACCTGCTTCAGTCATTGCTGCCTTCAACAGCCAATTACCAGGGACACAATCCATTGCTCTCACCTTGTTTACTTCCAATCCACCTGTTCCAGACAATGTGTTGGGCCAGGCTTTTCAAGTGAGTACCAAGGAGGTTGAGAAAATCAAGTCTAGGCTTGCACCCAAGAAGTAG 657 0.4734 MKLEGSLLLLTLALVLTTPAASDPDPLQDICVADPASGVKVNGFTCKDAAKVTPSDFFSDILAKPGATNTTYGSIVTGANVEKIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVGFITTANVFISKTIYKGEIFVFPKGLVHFQKNNAKEPASVIAAFNSQLPGTQSIALTLFTSNPPVPDNVLGQAFQVSTKEVEKIKSRLAPKK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0621 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Apr4g0621 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Apr4g0621 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Apr4g0621 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Apr4g0621 218 SMART Cupin_1_3 59 208 IPR006045 -
Apr4g0621 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 216 - -
Apr4g0621 218 Pfam Cupin 63 207 IPR006045 -
Apr4g0621 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Apr4g0621 218 CDD cupin_OxOx 23 214 - -
Apr4g0621 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Apr4g0621 218 PANTHER GERMIN-LIKE PROTEIN 13 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0621 Apr-Chr4 5148274 5149708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0621 8 218 Miscellaneous Gene Families AT3G05930 59.434 1.20e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0621 - - aprc:113863901 417.157