Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0613 ATGGCTTCAACTCTTCTGCCTCTTGTTACTTTCTTCTTAGCCTTTTCTGCTTCATATTTCCAGATCGCTGGGGCGGAACGCCTCTCTAGTCTGAAGCTTAACTCTGGTATTCTTCAGGACTCTATTGCTAAACAGATTAACGACAATCCAGAGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACAGTTGAACAATTTAAGCGCCTTCTTGGAGTCAAACCAACGCCTGGTAAGGAACTGAGAAGTGCGCCAGTTAAAACCCACCCAAAGTCATTGAAATTGCCAAAGAGTTTTGATGCAAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAAGCATTATCAGATCGCTTTTGCATCCATTTTGATGTAAATGTGTCTCTCTCTGTTAATGACCTTCTTGCATGCTGTGGCTTTTTGTGTGGATCTGGCTGCGACGGGGGATATCCCTTATATGCATGGCGATATTTGGTCGACCATGGTGTTGTCACTGAAGAGTGTGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCAGCATATCGGACTCCCAAGTGTGTTAAAAAGTGTGTCGATGGGAACCAGCTTTGGAAGAAGTCAAAGCACTACAGTGTCAATGCATACAGGGTCAAGTCTGATCCCTATGATATCATGGCAGAAGTTTATAAGAATGGGCCAGTTGAAGTCGCGTTCACTGTTTATGAGGATTTTGCGCACTACAAATCAGGAGTTTACAAACACGTCACAGGTTTTGAACTAGGCGGTCATGCTGTAAAGCTAATTGGGTGGGGAACAACTGATGATGGAGAGGATTATTGGCTTCTGGCAAATCAGTGGAACAGAGATTGGGGAGATGATGGTTACTTCAAGATCAGAAGAGGGACAAACGAATGTGGGATTGAAGAAGATGTGACTGCTGGTTTGCCTTCCCCCAAAAATATCGTAAGAGAAGTGACTGATATGGATGTTGATGCTGATGCTTCATTCTGA 1065 0.4423 MASTLLPLVTFFLAFSASYFQIAGAERLSSLKLNSGILQDSIAKQINDNPEAGWEAAINPRFSNYTVEQFKRLLGVKPTPGKELRSAPVKTHPKSLKLPKSFDARTAWSQCSTIGRILDQGHCGSCWAFGAVEALSDRFCIHFDVNVSLSVNDLLACCGFLCGSGCDGGYPLYAWRYLVDHGVVTEECDPYFDQIGCSHPGCEPAYRTPKCVKKCVDGNQLWKKSKHYSVNAYRVKSDPYDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHVTGFELGGHAVKLIGWGTTDDGEDYWLLANQWNRDWGDDGYFKIRRGTNECGIEEDVTAGLPSPKNIVREVTDMDVDADASF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0613 354 CDD Peptidase_C1A_CathepsinB 99 332 - -
Apr4g0613 354 Gene3D Cysteine proteinases 31 339 - -
Apr4g0613 354 PRINTS Papain cysteine protease (C1) family signature 120 135 IPR000668 GO:0006508|GO:0008234
Apr4g0613 354 PRINTS Papain cysteine protease (C1) family signature 281 291 IPR000668 GO:0006508|GO:0008234
Apr4g0613 354 PRINTS Papain cysteine protease (C1) family signature 297 303 IPR000668 GO:0006508|GO:0008234
Apr4g0613 354 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 340 - -
Apr4g0613 354 SUPERFAMILY Cysteine proteinases 42 334 IPR038765 -
Apr4g0613 354 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 279 289 IPR025660 -
Apr4g0613 354 PANTHER CATHEPSIN B-LIKE PROTEASE 3 20 340 - -
Apr4g0613 354 Pfam Papain family cysteine protease 98 331 IPR000668 GO:0006508|GO:0008234
Apr4g0613 354 Pfam Peptidase family C1 propeptide 38 80 IPR012599 GO:0004197|GO:0050790
Apr4g0613 354 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 120 131 IPR000169 -
Apr4g0613 354 SMART pept_c1 98 333 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0613 Apr-Chr4 5080311 5085619 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0613 K01363 - gmx:100788988 682.945