Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0559 ATGGGTACGGAACGAAAGAGGAAGGTGAGCTTGTTCGATGTGGTAGACGATTCTGTGGCTAAGATGACGAAATCCAACGGTGGCGTCAATAACAGCGTCGCTAACAGTCTCATCAATCGCTGGACAGCGAAGCCTTACTCCCAAAGGTACTTTGAGATTTTGGAGAAGAGAAAGACGCTCCCTGTTTGGCACCAGAAAGACGAGTTTTTCCAGACTTTGAAGGATAACCAGACTTTGATTCTCGTCGGCGAGACTGGTAGTGGCAAAACCACCCAGATCCCTCAGTTTGTGTTGGATGCTGTCGATTTAGAAACCCCGGATAAACGTAGGAAGATGATGATTGCATGTACTCAGCCGCGGAGAGTGGCTGCAATGTCTGTTTCTCGTCGTGTGGCTGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCAAGGACAGTTTTGAAGTATCTTACAGATGGTATGCTCTTAAGAGAAGCAATGGCAGATCCACTTTTGGAACGATATAAAGTTATTATTCTTGATGAGGCACATGAGAGGACTTTAGCTACAGATGTGCTATTTGGCCTTCTGAAGGAGGTCCTTAAAAATAGATCTGACTTAAAGTTGGTTGTTATGAGTGCAACTCTTGAAGCTGAAAAGTTCCAGGGCTATTTTTTTGGTGCCCCTCTTATGAAAGTTCCAGGAAGGCTACATCCTGTGGAAATTTTCTATACACAGGAACCTGAAAGGGATTACTTGGAGGCTGCCATTAGGACAGTGGTACAGATACACATGTGTGAACCTCCGGGAGATATACTTGTATTTCTGACTGGAGAGGAAGAGATAGAAGATGCATGTCGCAAAATATCAAAAGAAGTTTCTAATATGGGAGACCAGGTGGGGCCTGTCAAAGCGGTACCCCTATATTCTACTCTTCCTCCAGCCATGCAGCAGAAGATTTTTGAGCCACCTCCACCTCCACTGAAGGAGGATGGGCCTCCTGGAAGGAAGATTGTGGTATCAACTAACATAGCAGAAACTTCCTTGACAATTGATGGTATTGTCTATGTCATTGACCCAGGGTTTGCCAAGCAGACAGTTTATAATCCCCGCGTTCGTGTGGAATCTCTGTTAGTGTCACCAATATCTAAAGCCAGTGCACATCAGAGATCAGGGCGTGCTGGAAGAACTCAACCAGGGAAATGTTTTAGACTTTACACTGAGAAAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAAATTTTGAGATCAAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCTGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGAGCACTGGATGATGATGGTAACTTAACCAAACTGGGTGAAATTATGAGTGAGTTACCCTTGGACCCACAGATGTCAAAGATGCTTGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCAATTTCTGCCATGCTTTCAGTACCCAATTGCTTTATACGGCCTAGGGAGGCACAAAAAGCTGCGGATGAGGCAAAAGCTAGGTTCGGGCACATTGATGGAGATCATCTCACGCTCTTGAATGTTTACCATGCATACAAGCAAAATAATGAGGATCCATCTTGGTGTTATGATAACTTCATTAATCATAGGGCTTTGAAAGCAGCTGATAATGTTAGACAACAATTAGTGCGTATCATGGCCCGGTTTAATCTGAAGTTGTGCAGCACTGACTTCAACAGCCGTGACTATTATGTCAACATTAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTTGCTCATCTGGAACGTACAGGACACTACTTGACAGTGAAGGATAACCAGGTGGTGCATTTGCATCCATCAAATTGTCTAGACCACAAGCCTGAATGGGTCATTTATAATGAATATGTTCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATACGCGGGGAATGGTTGGTTGATATAGCACCGCATTACTATGATTTGTCTAATTTTCCACAATGTGAGGCAAAGCATGTTATTGAGAGACTTTACAAGAAGCGAGAGAAGGAAAAGGTGGAAGCGAGGAGCCGCAAATGA 2175 0.4345 MGTERKRKVSLFDVVDDSVAKMTKSNGGVNNSVANSLINRWTAKPYSQRYFEILEKRKTLPVWHQKDEFFQTLKDNQTLILVGETGSGKTTQIPQFVLDAVDLETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRSDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKISKEVSNMGDQVGPVKAVPLYSTLPPAMQQKIFEPPPPPLKEDGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQTVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSELPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFINHRALKAADNVRQQLVRIMARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKHVIERLYKKREKEKVEARSRK* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0559 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 610 IPR027417 -
Apr4g0559 724 CDD SF2_C_RHA 243 411 - -
Apr4g0559 724 Gene3D - 10 241 IPR027417 -
Apr4g0559 724 SMART ultradead3 57 248 IPR014001 -
Apr4g0559 724 Pfam AAA domain 75 220 IPR003593 -
Apr4g0559 724 Pfam Helicase associated domain (HA2) 465 553 IPR007502 GO:0004386
Apr4g0559 724 Pfam Helicase conserved C-terminal domain 268 402 IPR001650 -
Apr4g0559 724 SMART ha2_5 464 554 IPR007502 GO:0004386
Apr4g0559 724 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 724 - -
Apr4g0559 724 Gene3D - 242 424 IPR027417 -
Apr4g0559 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 239 IPR014001 -
Apr4g0559 724 CDD DEXHc_DHX15 48 238 IPR044756 GO:0003724|GO:0005524
Apr4g0559 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 444 IPR001650 -
Apr4g0559 724 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 615 691 IPR011709 -
Apr4g0559 724 SMART helicmild6 285 403 IPR001650 -
Apr4g0559 724 PANTHER ATP-DEPENDENT RNA HELICASE 1 724 - -
Apr4g0559 724 Gene3D - 449 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0559 Apr-Chr4 4639534 4643644 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0559 K12820 - gmx:100817506 1373.61