Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0554 ATGGCTCCTCCAAACGATCCAGTGAATTCCACCTTGGGACTAGAGTCATTTGAAAATGTTTTTGATTTATCTGATGGGAGGTTTACAGTAAAAGGTGTGCCATTACTCTCTGAGGTACCTATGAATGTCTCTTTCAGTTCCTTCTTCTCTGTCTGTCAACCCTCCGAAGCCCCACCTTCCCTCCTTCAGCGTGTCATTGCTGTGTCTCACAAAGGTGGTTTCTTTGGGTTCTCTCAGATGGAACCCTCCAATAGGTTGATGAACTCTTTGGGTAGCTTCAGTAGCAGGGACTTTGTTAGTATCTTCAGGTTCAAAACATGGTGGTCTACTCAGTGGGTGGGAAATTCTGGTTCAGATCTTCAAATGGAAACCCAATGGGTCCTCATTGAAGTTCCTGAAATCAAATCCTATGTCATAATCATTCCCATCATTGAAGCAAGTTTTAGGTCTGCTCTTCACCCTGGCTCTGATGGCCATGTCATGATTTGTGCTGAGAGTGGTTCTTCCCATACTAAAGCCTCAAATTTTAATTCAATTGCCTACGTGCATGTGTGTGAAAACCCTTACAACTTGATGAGAGAGACTTATAGTGCGCTTAGGGTTCACCTCAATTCCTTCAGATTGTTGGAAGAGAAAACGGTGCCAAATCTTGTTGACAAATTCGGTTGGTGCACTTGGGATGCTTTCTATTTAACGGTGAACCCTGTTGGAGTTTGGCATGGACTTAAGGATTTTGCAGAGGGTGGTGTGGCTCCAAGATTTGTTATCATGGATGATGGGTGGCAAAGTATCAATCTTGATGGTGATGACCCCAATGAGGATGCTAAAAATCTTGTTCTAGGTGGTGAACAAATGACTGCAAGGCTTCATAGACTTGATGAAGGTGACAAGTTCAAAAAGTACAAAGCTGGACTCCTATTGAGTCCTAATGCTCCTTCTTTTAACCCAAAGACGGTTAAGGAGTTGATTGCAAAAGGTATTGAAGTTGAGCGTTTGGAAAAGCAACGTGATGAAGTCATACAATCTGGGAGTTCCAATTTGACCGATATTGAGTCAAAGATCATGCAGGTCAAAAAGGAAATTGATGATCTCTTTGGGGGAGAGAAAAAAGAAAGCAATGCTTCAAAAAATGAATGTGGAAGGTGTTGTTGCAAAGCACAGGAGTATGGGATTAAGGCTTTCACAAAGGACTTGCGGACTGAATTCAAAGGTTTGGATGATGTTTATGTGTGGCATGCGCTTTGTGGCGCGTGGGGTGGTGTGAGGCCAGGGACTACACACCTAAATTCCAAAATTACCCCTTGCAAACTCTCCCCTGGTCTTGATGGAACAATGCCAGATCTTGCTGTGGTTAACATTGTGAAAGGGTCAATTGGGCTTGTTCATCCTAATCAAGCTTATGACTTGTACAACTCCATGCACTCTTATCTTTCACAATCTGGTATTACAGGAGTTAAAGTTGATGTCATTCATAGTCTTGAATATGTGTGTGAAGAATATGGAGGCAGAGTCGAACTTGCAAAGGCTTATTACGATGGTTTGACGGACTCTATTGTCAAGAATTTCAATGGAAATGGAATCATTGCTAGCATGCAGCAGTGTAATGACTTTTTCTTCCTAGGAACGAAGCAAATTTCAATGGGAAGAGTTGGGGATGACTTTTGGTTCCAAGATCCCAATGGGGACCCAATGGGAGTCTTTTGGTTACAAGGTGTACACATGATTCACTGTTCCTACAACAGCTTGTGGATGGGGCAGATGATTCAGCCCGACTGGGACATGTTCCAATCAGATCACGTGTGTGCCAAATTTCATGCAGGTTCAAGGGCTATTTGTGGTGGTCCTGTCTATTTGAGTGACAATGTTGGCTCTCATGACTTTGATCTGATTAAGAAGCTTGTGTTCCCTGATGGTACTGTACCCAAATGCATACATTTTCCCCTTCCAACAAGAGACTGCCTTTTCAAGAACCCTCTTTTTGACCAAAAAACAGTTCTCAAAATTTGGAACTTCAATAAGTATGGAGGAGTTATTGGAGCTTTCAACTGTCAAGGGGCTGGTTGGGATCCTAAGGTGCAGAAGATCAGGGGTTTCCCTGAATGCTACAAGCCAATATCTGGTACTGTACATGTAACTGAGGTTGAATGGGACCAAAAGAAAGAAGCATCCCATATGGGTAAGGCAGAAGAGTATGTAGTATACCACAATCAGGCTGAGAAACTTCATTTGATGACCCCAAAATCTGAACCAATTCAATATACCATCCAACCTTCCACTTTTGAGCTCTACAGCTTTGTCCCAATCACGAATCTTGGGGGTGGTAGCATCAAATTTGCACCAATTGGGCTGACAAACTTGTTCAACAGTGGAGGGGCAATTCAAGAATTGGAGTATGTTGAGAGTGGTGCTAAGCTTAAGGTTAAAGGTTGTGGGAGTTTCCTCGCTTACTCAAGTGAATCTCCAAAGAAGCTCCAATTGAATGGTTCTGATGTTGCTTTTGAGTGGCTGCTTGATGGCAAACTGACTCTCAACCTTGCTTGGATTGAAGAAGCTGGAGGGGTTTCTGATTTGGCAATTTTCTTCTAG 2586 0.4288 MAPPNDPVNSTLGLESFENVFDLSDGRFTVKGVPLLSEVPMNVSFSSFFSVCQPSEAPPSLLQRVIAVSHKGGFFGFSQMEPSNRLMNSLGSFSSRDFVSIFRFKTWWSTQWVGNSGSDLQMETQWVLIEVPEIKSYVIIIPIIEASFRSALHPGSDGHVMICAESGSSHTKASNFNSIAYVHVCENPYNLMRETYSALRVHLNSFRLLEEKTVPNLVDKFGWCTWDAFYLTVNPVGVWHGLKDFAEGGVAPRFVIMDDGWQSINLDGDDPNEDAKNLVLGGEQMTARLHRLDEGDKFKKYKAGLLLSPNAPSFNPKTVKELIAKGIEVERLEKQRDEVIQSGSSNLTDIESKIMQVKKEIDDLFGGEKKESNASKNECGRCCCKAQEYGIKAFTKDLRTEFKGLDDVYVWHALCGAWGGVRPGTTHLNSKITPCKLSPGLDGTMPDLAVVNIVKGSIGLVHPNQAYDLYNSMHSYLSQSGITGVKVDVIHSLEYVCEEYGGRVELAKAYYDGLTDSIVKNFNGNGIIASMQQCNDFFFLGTKQISMGRVGDDFWFQDPNGDPMGVFWLQGVHMIHCSYNSLWMGQMIQPDWDMFQSDHVCAKFHAGSRAICGGPVYLSDNVGSHDFDLIKKLVFPDGTVPKCIHFPLPTRDCLFKNPLFDQKTVLKIWNFNKYGGVIGAFNCQGAGWDPKVQKIRGFPECYKPISGTVHVTEVEWDQKKEASHMGKAEEYVVYHNQAEKLHLMTPKSEPIQYTIQPSTFELYSFVPITNLGGGSIKFAPIGLTNLFNSGGAIQELEYVESGAKLKVKGCGSFLAYSSESPKKLQLNGSDVAFEWLLDGKLTLNLAWIEEAGGVSDLAIFF* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0554 861 PANTHER - 1 861 IPR008811 -
Apr4g0554 861 SUPERFAMILY (Trans)glycosidases 217 633 IPR017853 -
Apr4g0554 861 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 4-RELATED 1 861 - -
Apr4g0554 861 Pfam Raffinose synthase or seed imbibition protein Sip1 21 844 IPR008811 -
Apr4g0554 861 Gene3D Aldolase class I 218 633 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0554 Apr-Chr4 4591460 4595199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0554 19 861 Glycoside Hydrolase AT4G01970 57.796 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0554 K06611 - gmx:100815922 1538.86