Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0535 ATGGCTCCTTCTCGTCGCAATAGCAACGGTCGATCACCTCTTGTCAATCAACAGCGTCAAATCACTTCCTTCTTCTCCAAACATCCTTCTCCCACTAACCCCAAAACCAACCCCAAACTAAGCCCTAACCATATTTCAGACCCTAACCCTAACCCTAGCCATAGCCCTACCGTTCCAACTCCTTCTCCTCTCGATTCCAAACCGCACAAGCCCCTTCTTCTCATTGGCGCTTCTTCTTCACCCTCCTCTTCGTCTTCTCTCTACGCTACTGAGGTCATTGGTAGAAGGGTCAAGGTTTACTGGCCTTTGGACAAAGCTTGGTACGAAGGTCTTGTCAAATCATTCGATAACCTCACTTCCAAGCACTTGGTTCATTACGACGATGGCGAAGAGGAATCCCTTGATCTTTCCAAGGAGAAGATCGAGTGGCTCCACGATTCCTCTTCGAAGAAGCTTAGACGGCTGCGTCGTGGCGTTCCCGCCGTTAGGAAGATGGTGATCGAGGACGACGAGGTGGAAGAAAGTCGCAAAGAAGAAGACCACGAACATGATGATGATGGTGATGATTCCAATGATGAAGATTGGGGGAAGAATGCTGCACTGGAGGATGCTGGGGACGATGGAGAAGAAGATACCGATCTAGAGGATGAATGCGACGTAGAAGAGAGGGTTAAAGGAAGGTCTAGTGGGAAGGTTGAATCTAAAAAGCGGAAACTGATTAGAACAGAGAAAGCGGAGCCTGCAAAAAAGAGCAAGAGTGGAGGGGAAGTTGGTAAGGGGGCTTTTAAGCTCTCGGTGGCGGAGCCTACTAGTATTTTGGAGATTAAAAAGGCATCTAATGGTGCTGACAACGTTGCAAATGTTGAGGTCTCTGAAAGATTTGCATCTCGTGACAATCAGAAATTGCGCTTCCTGAGAGAAGATCGCAGGGATGCCAAGCGAAGGCGTCCTGGAGATGAAAATTATGACTCAAGAACTCTCTACTTGCCTCCTGGTTTCTTAGGGAGTTTGTCAGATGGTCAGAAACAATGGTGGGAATTCAAGTCAAAGCATATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTCAAAGAGCTCGACTTGCAGTATATGAAGGGAGAGCAACCTCATTGTGGATTTCCGGAGAGGAATTTCTCAATGAATGTGGAAAAACTGGCTAGGAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGGAAGGAGAAGGGCTCTAAAGATAAGGTTGTGAGGCGTGAAATATGTGCAGTAGTTACAAAAGGCACATTAACGGATGGGGAGTTGCTGTCAGCAAACCCTGAAGCTGCATATTTAATGGCCCTGACTGAGCATCATCAAAACCTTCAAAATGAAATTTCAGAGCATATCTATGGTGTTTGTATGGTTGATGTTGCCACAAGCAGAGTCATTCTTGGACAGTTTAAGGATGACTCTGAGTGCAGTGCCTTGTGCTGTATCTTATCTGAGATCAGGCCTGTTGAAATTGTGAAACCTGCTAAACTACTCAGTGCCGAAACAGAGAGAGTGCTACTGAAGCATACTAGAAGTCCTTTAGTGAATGAATTAGTTCCCACCGTGGAATTCTGGGATGCTGACAAAACTGTAGATCAATTGAAGAGAATTTACAGGGACCCTGAAGATGTTAGTGTTGAAGATAGTGGGTTAGATTGCCTGCCTGATGTTTTACAGGAGCTGGTGAAAACAGGTGATGACAGTAGAAGTGCACTTTCAGCTCTGGGTGGTGCTCTCTATTATCTGAAACAGGCTTTTCTGGATGAGGGGTTGCTTAGATTTGCACAGTTTGAGCTACTTCCATGTTCTGGTTTAGGAAATCTTGCTTCAAAACCCTACATGGTTCTTGATGCAGCAGCCCTGGAGAATCTTGAGATTTTTGAGAATAGCAGAAATGGAGATTCTTCAGGCACGCTCTATGCCCAACTAAATCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCTAGACCATTATGTAACGTGGAGTTAATTAAGGAACGCCAAGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTGCCTTATGCACTAGAATTTCGAAAAGCATTATCAAGGCTACCTGACATGGAGCGGTTGCTGGCACGCATCTTCTCTACTAGTGAAGCTAGTGGAAGAAATGCTAATAAAGTGGTTCTGTATGAGGATGCGTCAAAGAAACAGCTGCAAGAGTTTATTTCAGCTCTGCGTGGTTGTGAACAAATGGCACAAGCTTGCTCTTCACTTGGTGTCATTTTGAAGGGTGTCAAATCTGGACAACTTAATCATCTGCTAACACCTGGTAAAGGTCTTCCTGATATTTGCCTGGATCTTAATCATTTCAAGGATGCCTTTAACTGGGTGGAAGCCAGTAACTCTGGGCGTATAATACCTCATGAAGGAGTTGACATGGAGTATGACTCAGCCTGTAAGGCAGTTAAAGAGGTTGAGGCAAGTTTATTAAAGCATCTCAAGGAGCAGAGGAAACTACTTGGAGACACATCAATCAATTATGTCAATATTGGAAAGGAGACATACCTATTGGAAGTGCCAGAAAATTTGTCTAGGAATATTCCTCAGGATTATGAATTGCGTTCATCCAGAAAAGGCTTCTTTAGGTACTGGACTCCAGATATTAAAAAGTTTTTAAGAGAGCTCTCCCAAGCTGAATCTGAAAAGGAGTTCCTATTGAAAAGTATATTGCATAGATTAATTGGGCGTTTTTCTGAACATCACACTAAATGGAAGCAGTTGGTGTCTACAACTGCAGAACTGGATGTTTTGATTAGTTTAGCTATTGCCAGTGACTACTATGAAGGACCAACATGCAGACCTAGTTTCATAGGCACATTATGTACAACAGAAACAAAAGCTCCATACCTCCATGCTAAAAGTTTGGGACACCCAGTTCTTAGGAGTGATACCTTAGGCAAGGGTGCCTTTGTACCCAATGATATAACCATTGGTGGTCCAGATCATGCTAGCTTTATTCTTCTAACCGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGATTTTGGCCCAGGTAGGGGCTGATGTCCCAGCAGAAAGTTTTGTTTTGTCACCAGTGGACCGAATTTTTGTTAGAATGGGGGCCAAAGATAATATCCTTGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACGATGCTGTTGTCAGCCACTTGTAATTCATTGGTGGCTCTGGATGAGCTTGGGCGAGGGACCTCAACTTCTGATGGGCAAGCTATTGCGGAATCGGTATTAGAACATCTTGTGCGGAGGGTGCAGTGTCGTGGATTATTTTCTACACACTATCATCGATTAGCTATAGATTATCTCAAAGATCCCAAGGTCTGTCTCTGCCACATGGCATGCCAAGTTGGTGGTGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTGACACTTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGATTAGCTGGACTTCCAACTTCTGTGCTTCAGAAGGCTGCCGCCAAGTCCAGAGAATTTGAGGCCACTTATGGTAAATGCAGAAAGAAGTCTAAAGAAACAAATTCTGCCAATCAAAATTGGTTTGACAAGATAGCCGTTATCATACAAAAATTGAACAATGCTGCTACAAATTTGAGTTGCCAGGAAACCATTTGCGTTAGTTCCCTAAGAGAACTTCAGGATAAAGCAAGAGAACTAATGCAGCGATGTTAA 3861 0.4395 MAPSRRNSNGRSPLVNQQRQITSFFSKHPSPTNPKTNPKLSPNHISDPNPNPSHSPTVPTPSPLDSKPHKPLLLIGASSSPSSSSSLYATEVIGRRVKVYWPLDKAWYEGLVKSFDNLTSKHLVHYDDGEEESLDLSKEKIEWLHDSSSKKLRRLRRGVPAVRKMVIEDDEVEESRKEEDHEHDDDGDDSNDEDWGKNAALEDAGDDGEEDTDLEDECDVEERVKGRSSGKVESKKRKLIRTEKAEPAKKSKSGGEVGKGAFKLSVAEPTSILEIKKASNGADNVANVEVSERFASRDNQKLRFLREDRRDAKRRRPGDENYDSRTLYLPPGFLGSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALTEHHQNLQNEISEHIYGVCMVDVATSRVILGQFKDDSECSALCCILSEIRPVEIVKPAKLLSAETERVLLKHTRSPLVNELVPTVEFWDADKTVDQLKRIYRDPEDVSVEDSGLDCLPDVLQELVKTGDDSRSALSALGGALYYLKQAFLDEGLLRFAQFELLPCSGLGNLASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCNVELIKERQEAVAGLKGVNLPYALEFRKALSRLPDMERLLARIFSTSEASGRNANKVVLYEDASKKQLQEFISALRGCEQMAQACSSLGVILKGVKSGQLNHLLTPGKGLPDICLDLNHFKDAFNWVEASNSGRIIPHEGVDMEYDSACKAVKEVEASLLKHLKEQRKLLGDTSINYVNIGKETYLLEVPENLSRNIPQDYELRSSRKGFFRYWTPDIKKFLRELSQAESEKEFLLKSILHRLIGRFSEHHTKWKQLVSTTAELDVLISLAIASDYYEGPTCRPSFIGTLCTTETKAPYLHAKSLGHPVLRSDTLGKGAFVPNDITIGGPDHASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFVLSPVDRIFVRMGAKDNILAGQSTFLTELSETATMLLSATCNSLVALDELGRGTSTSDGQAIAESVLEHLVRRVQCRGLFSTHYHRLAIDYLKDPKVCLCHMACQVGGGIAGLDEVTFLYRLTLGACPKSYGVNVARLAGLPTSVLQKAAAKSREFEATYGKCRKKSKETNSANQNWFDKIAVIIQKLNNAATNLSCQETICVSSLRELQDKARELMQRC* 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0535 1286 MobiDBLite consensus disorder prediction 166 183 - -
Apr4g0535 1286 CDD TUDOR 94 138 IPR002999 -
Apr4g0535 1286 MobiDBLite consensus disorder prediction 166 257 - -
Apr4g0535 1286 PIRSF Msh6 1 1276 IPR017261 GO:0006298|GO:0030983
Apr4g0535 1286 Gene3D - 84 142 - -
Apr4g0535 1286 Coils Coil 295 315 - -
Apr4g0535 1286 Pfam MutS family domain IV 835 926 IPR007861 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 Gene3D - 977 1258 IPR027417 -
Apr4g0535 1286 MobiDBLite consensus disorder prediction 1 87 - -
Apr4g0535 1286 Gene3D - 645 966 - -
Apr4g0535 1286 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 302 1240 - -
Apr4g0535 1286 MobiDBLite consensus disorder prediction 1 51 - -
Apr4g0535 1286 Gene3D MutS, connector domain 462 641 IPR036678 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 SMART DNAend 665 1008 IPR007696 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 Pfam MutS domain I 341 453 IPR007695 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 Gene3D - 811 942 - -
Apr4g0535 1286 SUPERFAMILY DNA repair protein MutS, domain III 648 972 IPR036187 -
Apr4g0535 1286 Pfam MutS domain II 464 616 IPR007860 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 SMART TUDOR_7 88 147 IPR002999 -
Apr4g0535 1286 MobiDBLite consensus disorder prediction 219 253 - -
Apr4g0535 1286 Pfam MutS domain V 1032 1222 IPR000432 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 SUPERFAMILY DNA repair protein MutS, domain I 326 449 IPR016151 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 MobiDBLite consensus disorder prediction 52 66 - -
Apr4g0535 1286 Pfam MutS domain III 651 966 IPR007696 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 SUPERFAMILY DNA repair protein MutS, domain II 459 660 IPR036678 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 MobiDBLite consensus disorder prediction 204 218 - -
Apr4g0535 1286 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 302 1240 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Apr4g0535 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1223 IPR027417 -
Apr4g0535 1286 SMART mutATP5 1028 1220 IPR000432 GO:0005524|GO:0006298|GO:0030983
Apr4g0535 1286 SUPERFAMILY Tudor/PWWP/MBT 92 133 - -
Apr4g0535 1286 Coils Coil 913 933 - -
Apr4g0535 1286 Gene3D DNA repair protein MutS, domain I 296 457 IPR016151 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0535 Apr-Chr4 4446218 4455798 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0535 K08737 - gmx:100811104 2064.27