Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0530 ATGGCTACAACGTCCTCACCCCTCATTGCGCTCTTCCTTCTGCTCCTTTTGGGGCTTTTCCGGCACAATGGGGAGGCACGTGACCCATTTGCATGTTACCCAAAAGATGGCACCACGAAGAACATGCCATTTTGCAAGGTGTCACTGGCGATACCAGAGAGGGTAAATGACCTCATTGGAAGGTTGACAATGGAAGAGAAGGTTAACCTTCTAGTGAACAATGCCGCGGCGGTTCCAAGGCTTGGGATCAAAGGCTATGAGTGGTGGTCTGAAGCACTCCATGGAGTTTCAAATGTGGGTCCTGGAACCAAGTTTAATGCCAAGTTCCCCGGTGCTACTAGCTTCCCTCAAGTCATCACCACCGCTTCTTCCTTCAATGCTTCTTTGTGGGAGGCAATTGGACGGGTAGTCTCGGACGAAGCAAGGGCAATGTACAACGGTGGAACAGCAGGGCTCACATATTGGAGCCCAAACGTTAACATTTTCAGGGACCCAAGGTGGGGCCGTGGACAGGAAACTCCCGGTGAGGACCCTGTGCTAGCCGGTACATATGCTGCTAGTTACGTCAGAGGCCTACAGGGAACAGACCGTAACCGGTTGAAGGTTGCTGCTTGTTGCAAACACTTTACGGCTTACGACCTCGATAATTGGAATGGCATGGATCGCTTCCACTTTAACGCGGAGGTGAGTAAACAGGACATAGAGGACACATTCGACGTGCCATTCAGGATGTGTGTGAACGAAGGGAAAGTAGCGAGTGTAATGTGTTCTTATAATCAGGTCAATGGAGTCCCCACTTGCGCTGACCCCAACCTCCTGAAGAGAACAGTTCGTGGGCAGTGGCATCTTGATGGGTACATTGTATCAGACTGTGACTCTGTCGGGGTGTTTTACGGTAACCAACACTATACATCAACGCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCCGGTTTGGATTTGGACTGTGGGCCTTTCCTAGGTTCGCACACGCAGGAAGCGGTGAAAAAAGGCTTGTTAAGCGAAGCTGATGTGAATGGTGCTTTGGTAAACACACTAACTGTCCAAATGAGGTTAGGGATGTTTGATGGAGAGCCATCGACTCAGGCATATGGCAACTTGGGCCCAAAAGATGTGTGCAAACCGACCCATCAAGAGCTCGCTCTCGAGGCTGCCAGACAAGGAATTGTGCTCCTTAAGAATGATGGTCCCACTTTGCCTCTCTCCCCACAGCGTTACCGTACCTTGGCCGTCATTGGGCCCAATTCCAATGCCACTGTTACAATGATTGGAAATTATGCGGGTATTGCTTGCGGATATACCAGCCCCTTACAAGGAATAGGAAGATATAGCCGGACTATTCACCAGTTCGGTTGTGAAAAAGTTGCTTGTGCTAATGACAAGCAGTTTGGGCCTGCGCTAAATGCAGCCCGTCAAGCAGATGCGACCGTCCTAGTGATGGGCCTGGACCAGTCTATTGAAGCTGAAACAAGGGACAGGGTTGGCTTGCTTTTACCTGGGCACCAACAAGACCTTGTTTCAAAAGTAGCAGCTGCCTCAAAAGGACCAACTATTTTGGTCATAATGTCTGGTGGGCCTGTGGATATCACTTTTGCAAAGAATGACCCTCGAGTTGTTGGCATCTTGTGGGCTGGTTATCCGGGCCAAGCTGGTGGTGCTGCCATTGCAGATTTACTGTTTGGAACGGCTAACCCGGGAGGCAAGCTTCCAGTGACATGGTACCCACAGGAGTTCATAAGAAACTTGTCAATGACAAATATGGGAATGAGAGCAAGCAAATCAAAAGGATACCCAGGAAGAACGTATAGATTCTACAATGGGGCAGTGGTGTATCCATTTGGACATGGATTGAGTTACACACACTTTGTTCATACAATAGCAAGTGCCCCCACAGTGGTGTCAATTCCCTTGAATGGACACCGCCATGCAAATGTGACCAACTTTTCAAACAAAGCGATTAGAGTGACACATGCAAGGTGTGGGAAACTCTCGATCACCCTTGAGGTGGACGTGAAGAATGTGGGATCAAGAGATGGGACTCACACACTGTTAGTGTTCTCTGCTCCGCCAGCGGGTGCTGGGCATTGGGCATTAGAGAAGCAACTCGTGGCTTTTAAGAAGGTGCATGTGCATGGCAAGGCTGAGCAGAGAGTGAGAGTGAATATTCATGTTTGCAAGCTCCTAAGTGTAGTGGATAGGTCTGGGATTAGGAGAATCCCAATGGGGGAACACAGTCTTCACATTGGCGATGTCATACACTCCGTGTCACTTCAAGCTGCGGCACTTGGGATTATCAAGTCATGA 2325 0.4951 MATTSSPLIALFLLLLLGLFRHNGEARDPFACYPKDGTTKNMPFCKVSLAIPERVNDLIGRLTMEEKVNLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFNAKFPGATSFPQVITTASSFNASLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGTYAASYVRGLQGTDRNRLKVAACCKHFTAYDLDNWNGMDRFHFNAEVSKQDIEDTFDVPFRMCVNEGKVASVMCSYNQVNGVPTCADPNLLKRTVRGQWHLDGYIVSDCDSVGVFYGNQHYTSTPEEAAADAIKAGLDLDCGPFLGSHTQEAVKKGLLSEADVNGALVNTLTVQMRLGMFDGEPSTQAYGNLGPKDVCKPTHQELALEAARQGIVLLKNDGPTLPLSPQRYRTLAVIGPNSNATVTMIGNYAGIACGYTSPLQGIGRYSRTIHQFGCEKVACANDKQFGPALNAARQADATVLVMGLDQSIEAETRDRVGLLLPGHQQDLVSKVAAASKGPTILVIMSGGPVDITFAKNDPRVVGILWAGYPGQAGGAAIADLLFGTANPGGKLPVTWYPQEFIRNLSMTNMGMRASKSKGYPGRTYRFYNGAVVYPFGHGLSYTHFVHTIASAPTVVSIPLNGHRHANVTNFSNKAIRVTHARCGKLSITLEVDVKNVGSRDGTHTLLVFSAPPAGAGHWALEKQLVAFKKVHVHGKAEQRVRVNIHVCKLLSVVDRSGIRRIPMGEHSLHIGDVIHSVSLQAAALGIIKS* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0530 774 PANTHER SUGAR HYDROLASE-RELATED 5 769 IPR044993 GO:0009044|GO:0045493
Apr4g0530 774 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 5 769 - -
Apr4g0530 774 Gene3D - 382 627 IPR036881 GO:0004553|GO:0005975
Apr4g0530 774 SMART Fn3_like_2 688 759 IPR026891 -
Apr4g0530 774 Pfam Fibronectin type III-like domain 691 757 IPR026891 -
Apr4g0530 774 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 396 629 IPR036881 GO:0004553|GO:0005975
Apr4g0530 774 Pfam Glycosyl hydrolase family 3 C-terminal domain 396 626 IPR002772 GO:0004553|GO:0005975
Apr4g0530 774 Gene3D - 54 371 IPR036962 GO:0004553|GO:0005975
Apr4g0530 774 PRINTS Glycosyl hydrolase family 3 signature 115 134 IPR001764 GO:0004553|GO:0005975
Apr4g0530 774 PRINTS Glycosyl hydrolase family 3 signature 202 218 IPR001764 GO:0004553|GO:0005975
Apr4g0530 774 PRINTS Glycosyl hydrolase family 3 signature 276 294 IPR001764 GO:0004553|GO:0005975
Apr4g0530 774 SUPERFAMILY (Trans)glycosidases 42 395 IPR017853 -
Apr4g0530 774 Pfam Glycosyl hydrolase family 3 N terminal domain 109 351 IPR001764 GO:0004553|GO:0005975
Apr4g0530 774 Gene3D Immunoglobulins 651 770 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0530 Apr-Chr4 4413780 4419270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0530 8 774 Glycoside Hydrolase AT1G02640 72.490 0.0 1164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0530 - - gmx:100789316 1382.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0530 4 4413780 4419270 Apr8g0081 8 664291 669790 PCT