Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0520 ATGGTTAAAACGACGTCGTCCCCTTCTTCCTGCTCTCCTGTGACCATTACAGTGTCCTCCGGAGGCAAAACAGGAGGAAGCAGAAGCATGGGACTAACGAGTCCCATTCCTCGTGCTTCAGTCTCCAACAACCAAAATTCTCCTCTGAGTTCTAGATCAAACAGAGCTTCCCTCGGTGTAAGGAGGCTCTCAGGTGGAGGAGATGGCATGGAAGAAATGAACTCAGAATACGTAACATACACTGTTCACATTCCTCCAACCCCTGATCGCCAACCCCTCTCAACATCACAAACAAGCATCCCCGAAGATAATAACAGCAAGAACAACAACACCAGCTACATCTCTGGCACAATCTTCACTGGGGGTTTCAACTCTGTCACACGTGGCCACGTCATAGAATGCTCAATGGAACGCGATGAGACCCTTAAATCTGGGTTGGTTTGTGGAATGAAAGGTTGTGATGAGGAAGCAGTAGCAAGGGCTAATGGTCCATGCGAGTGTGGGTTTAAGATTTGCAGGGACTGTTACTTGGAGTGTGGTGGAAATGGAGGAGGAGGAGGAGGTACTGCTGGCAAGTGTCCTGGTTGCAAAGAGCCTTATAAGTATATGAGCGATGATGATGATGAACAAGAAGAAGAAGAGGAAGCTGAAGACCAGGCACTGCCTTTGCCTTCCATGGCAGAGTTCAAATTGGACAAAAGGCTTTCTCTTGTGAAATCCTTCAAGGCACAGAACCACCCTCCTGATTTTGACCACACTCGCTGGCTCTTTGAAACTAAAGGAACCTATGGCTATGGAAATGCTGTGTGGCCTAAAGATGGGTATGGTGCTAATGGATTCGAACCTCCTCCGGAGTTTGGAGAGAAAGCAAGAAGACCCTTGACCCGTAAGGTTGGAGTTTCAGCTGCTATTCTCAGTCCTTATAGGTTGCTTATTCTGCTACGTCTTGCTGCTTTGTGCTTGTTTCTTACATGGAGGATTAGACACCCCAACCATGAAGCACTTTGGCTGTGGGCAATGTCCATAACTTGTGAGCTTTGGTTTGCATTTTCGTGGCTTCTTGATCAGCTCCCTAAACTCTGCCCTGTGAACAGAGTCACTGATCTCTCTGTGCTCAAAGAGAGGTTTGAGTCACCGAACCTTCGCAACCCAAAAGGGAGGTCTGATTTACCCGGCATTGACGTGTTCGTTTCCACGGCAGACCCAGAGAAGGAGCCTCCTCTTGTCACTGCCAATACCATTCTATCTATCCTTGCAGTTGATTATCCAGTGGAGAAGGTTGCGTGTTACTTATCTGATGATGGTGGTGCTTTGTTGACTTTTGAAGCTCTTGCTGAGACAGCTAGCTTTGCTAGAATATGGGTTCCTTTCTGTAGAAAACACCAGATAGAGCCCCGAAATCCCGAAGCATACTTTGGGCAGAAGCGTGATTTTCTCAAGAACAAGGTTCGGTTGGACTTTGTGAGAGAGAGGAGAAGAGTGAAGAGGGAATATGATGAATTCAAAGTGAGGATAAATTCATTACCTGAATCCATAAGGAGAAGATCCGATGCTTACAATGCTCATGAGGAGTTACGAGCCAAGAAGAAACAGATGGAAGCAGGTTCTAATGTGTCTGAACCAATTAAGGTTCCTAAAGCTACATGGATGTCTGATGGTTCTCATTGGCCAGGAACTTGGGCATCAGCAGAACAAGACCACTCAAGAGGGGACCATGCTGGTATAATTCAGGCAATGTTGGCTCCACCAAATGCAGAACCTGAATTTGGTGCAGAAGCTGATGGGGAGAACTTGATTGACACGACAGATGTTGATATCAGGTTGCCAATGCTTGTTTATGTGTCGCGTGAGAAGAGGCCGGGATACGATCACAACAAGAAAGCAGGAGCCATGAACGCTCTTGTTCGGACCAGTGCCATAATGTCCAATGGACCATTCATTCTGAATCTTGATTGTGATCATTATATATACAATTCCTTGGCTCTCAGAGAAGGAATGTGCTTTATGCTTGACAGGGGTGGTGATAGGATATGCTACGTTCAGTTCCCTCAAAGGTTTGAGGGCATTGACCCCAGTGATCGATATGCAAACCACAACACAGTGTTCTTTGATGTGAGCATGAGAGCTCTTGATGGCTTACAGGGTCCAATGTACGTGGGAACAGGCTGCATATTCAGAAGAACAGCTCTTTATGGGTTTAGTCCTCCTAGAGCTACAGAACATCATGGTTGGCTTGGAAGGAGGAAAATTAAGCTGTTTTTGAGAAAGCCTAAGGTGTCAAAGAAGGAAGAAGATGAAGTGGCTCTGCCAATAAATGGTGATCCTAATGATGATGATGCAGATATTGAGTCCTTGCTTCTTCCTAAAAGGTTTGGGAATTCTACTTCACTTGCTGCATCCATTCCTGTGGCAGAATACCAGGGAAGGTTGCTTCAAGACTTGCAAGGAAAGGGAACACATGGAAGGCCGGCAGGTTCTCTTGCTGTGCCTAGAGAACCATTAGATGCAGCCACTGTTGCTGAGGCAATTAGTGTCATATCTTGTTTCTACGAGGACAAGACTGAATGGGGCAAAAGAGTTGGGTGGATATATGGTTCAGTTACAGAAGATGTGGTGACTGGTTACAGAATGCACAATAGAGGGTGGAGATCTGTGTACTGTGTGACCAAGAGGGATGCTTTTAGAGGAACAGCTCCAATCAATTTGACAGACAGGCTCCACCAAGTGCTTAGATGGGCAACAGGATCTGTTGAGATCTTCTTCTCGAGGAACAATGCGTTATTGGCTAGTCCTAGAATGAAATTCTTGCAGAGGGTGGCATATTTCAATGTGGGAATGTACCCTTTCACGTCAATGTTTTTGATTGTCTATTGCTTTCTACCTGCAGTGTCACTTTTTTCAGGGCAGTTTATAGTTCAATCCCTGAGTGCAACTTTTCTAGTGTTCTTGTTGGGCATCACAATCACACTGTGCTTGCTTGCACTGCTTGAGATCAAGTGGTCAGGAATCACTCTGCATGATTGGTGGCGAAATGAACAGTTTTGGTTGATTGGTGGCACAAGTGCACATCCTGTTGCTGTTTTACAAGGGTTGTTGAAGGTCATAGCAGGAGTAGACATATCATTCACCTTGACGTCAAAGTCAGCCACTTCAGAAGATGGAGATGATGAGTTTGCTGATCTTTATGTGGTAAAGTGGAGCTTTCTAATGATCCCTCCAATTACAATTATGATGGTGAACACCATTGCTATTGCTGTAGGAGTAGCCAGGACTATGTACAGCCCATTTCCACAATGGAGCAAACTAGTAGGAGGGGTGTTTTTCAGCTTCTGGGTCTTATGCCATCTTTACCCGTTTGCGAAGGGTTTAATGGGAAGGAGAGGGAAGGTTCCAACCATAGTTTATGTTTGGTCTGGATTGCTCTCCATTATTATCTCTTTGCTTTGGGTGTACATAAACCCTCGCTCTTCTGAATCTCCATCCACCTCTCTATCCTCTTCGTGTACCCTTCCTTCCTCCACTTCCCCAGATCCATCACCATCACTCCCGTGTTGA 3555 0.4577 MVKTTSSPSSCSPVTITVSSGGKTGGSRSMGLTSPIPRASVSNNQNSPLSSRSNRASLGVRRLSGGGDGMEEMNSEYVTYTVHIPPTPDRQPLSTSQTSIPEDNNSKNNNTSYISGTIFTGGFNSVTRGHVIECSMERDETLKSGLVCGMKGCDEEAVARANGPCECGFKICRDCYLECGGNGGGGGGTAGKCPGCKEPYKYMSDDDDEQEEEEEAEDQALPLPSMAEFKLDKRLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNAVWPKDGYGANGFEPPPEFGEKARRPLTRKVGVSAAILSPYRLLILLRLAALCLFLTWRIRHPNHEALWLWAMSITCELWFAFSWLLDQLPKLCPVNRVTDLSVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARIWVPFCRKHQIEPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEAGSNVSEPIKVPKATWMSDGSHWPGTWASAEQDHSRGDHAGIIQAMLAPPNAEPEFGAEADGENLIDTTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWLGRRKIKLFLRKPKVSKKEEDEVALPINGDPNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGTHGRPAGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRVAYFNVGMYPFTSMFLIVYCFLPAVSLFSGQFIVQSLSATFLVFLLGITITLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHPVAVLQGLLKVIAGVDISFTLTSKSATSEDGDDEFADLYVVKWSFLMIPPITIMMVNTIAIAVGVARTMYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGLMGRRGKVPTIVYVWSGLLSIIISLLWVYINPRSSESPSTSLSSSCTLPSSTSPDPSPSLPC* 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0520 1184 MobiDBLite consensus disorder prediction 85 109 - -
Apr4g0520 1184 MobiDBLite consensus disorder prediction 1 72 - -
Apr4g0520 1184 MobiDBLite consensus disorder prediction 88 109 - -
Apr4g0520 1184 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 96 1158 - -
Apr4g0520 1184 MobiDBLite consensus disorder prediction 1158 1184 - -
Apr4g0520 1184 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 598 742 IPR029044 -
Apr4g0520 1184 SUPERFAMILY RING/U-box 160 202 - -
Apr4g0520 1184 Pfam RING/Ubox like zinc-binding domain 160 201 - -
Apr4g0520 1184 Pfam Cellulose synthase 393 1163 IPR005150 GO:0016020|GO:0016760|GO:0030244
Apr4g0520 1184 SUPERFAMILY Nucleotide-diphospho-sugar transferases 408 961 IPR029044 -
Apr4g0520 1184 MobiDBLite consensus disorder prediction 1158 1175 - -
Apr4g0520 1184 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 96 1158 - -
Apr4g0520 1184 MobiDBLite consensus disorder prediction 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0520 Apr-Chr4 4318304 4326411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0520 38 1171 Glycosyltransferase AT3G03050 65.952 0.0 1535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0520 K00770 - gmx:100804687 2067.74