Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0508 ATGGCATCTTCACCCTCCATGTCAGTTTCTTTAGAATGCGTGAACGCGTGCAAGCTGTGGAGAGCGGATGGAAACGGAAAATTCGACTGTAGTCTTCTATCGTGCGCGTGGAAAGCTCCGAGGGTCCTCACTGGATTTCTTGCGAGCACGACACACCCTCATCAGTGTTCATCCTTGTCGAACGGGCGTAACGGAAGAAGGAACCGGTATAATTTTGGATGCGAAGCCTTTAGTGTAGTAGGTTCATATCCTGATGAAGCACTTGATATCGTACTTCTTGCAAGATTCTCTAGATCTATCTTGTCTCGAGTTGGAAATGGAAGACGGAAATTATGTTGTTCTTCAGCCTTCTCTTTGGATACTGCCACTGAGTTTTCTGCAGAAAGTTTGTGGGAGGATCTTAAACCTGCGATCTTGTACCTGTCTCCTAAAGAACTGAAGTTAGTCCACAATGCTTTTATGTTGGCATTTGAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCATCCAGTTGAGGTTGCACGTATTCTGGGAGAACTTGAACTTGACTGGGAGTCGATTGTTGCTGGATTACTTCATGATACAGTTGAGGACACAAATTTTGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACCGTGCGCCACATTGTGGAAGGGGAGACCAAGGTGTCAAAACTGGGAAAGTTAAAGTACAAGAATAAAAATGATTCCGTTCAAGATGTCAAGGCAGAGGATCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTCCGTGTTATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGCACTCTATCACATATGCCTCCACATAAACAGACTAGCATTGCGATGGAGACATTGCAGGTGTTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCATTTATTTACACAAATGCGGAAGACTATGCCAAGGTGAAAAGAAGAGTGTCAGAGCTATACAAAGAACACGAGAAAGAACTTGTGGAGGCGAACAAAATATTGATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACTGTCAAAACAGAAGTTCGTGCTGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTTCTCAAATCAAGAAGTTCAATCAGTGAGATTAACCAAGTTGCACAGCTTCGCATTATTATTAAACCAAAGCCATGCGTTGGGGTTGGGCCTTTATGCAATTCACAGCAGATTTGCTATCATGTTCTGGGATTGATCCATGGAATCTGGACCCCCATTCCAAGATCTGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTATCAGAGTCTTCATACCACTGTGATTCCTTTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACAGGCTTGGTTGGAAGTGCGATGCCCAGTAGCAAAAGCACAAGAGGGAAGACAGTTTGTCTTAACAATGCCAATATTGCACTCAGAATTGGCTGGCTAAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCCAGGGAATTTGTAGACACTATTACAAGAGATCTGCTTGGCAGCCGTGTCTTTGTTTTCACACCAAGAGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATCGACTATGCTTACATGATACACACTGAAATAGGCAACAAGATGGTAGCTGCCAAGGTCAATGGCAATCTTGTTTCTCCTGCTCGAGTACTTGCAAATGCAGAAGTTGTGGAGATAATAACATATAATGCACTTTCTAGCAAATCAGCTTTTCAGAGGCACAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCGAGACACAAAATAATGAAGTTTCTAAGGGAGCAAGCTGCACGTTCTGCTGCTGATATCACTACAGAAGCAGTCAATGACTTTGTCACTGATTCTGAAGGGGATAGTGAATCTGAACAGCTGTCAAATGGTTCTAAACATACATGGGGGAAAATGTTTGTGAATGGAGTGGAAATATCAACTCCAGGAAGAAGTGAGACTGTCCTCCAAAGTACGAATGGAAGTGTTTGGACACCCAAGATCAATGGAAAACATAACAAGCATGTACAGCATGAAAATTTCAAGGCCAAAGGGGAGTTGTTGCTGCAGGGAAACCTTGTTGCGAAAATGATTCAAGTTAACATTCCAAGATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCCTCTTGGCACAATATAGAAGGACACTCCATCCAGTGGTTATCTGTAGTATGTATAGACCGAAGAGGCATGATGGCTGACGTCACTACAGCATTGGCCACTGCAGGCATAACCATATGTTCTTGTGTGGCTGAGATGGATGGAGGAAGGGGAATGGCTGTTATGCTATTTCACGTAGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTAGATCTAATACTGGGCGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTGATGGAAGACTCTGGCATTCTCGAATGCTAG 2646 0.4289 MASSPSMSVSLECVNACKLWRADGNGKFDCSLLSCAWKAPRVLTGFLASTTHPHQCSSLSNGRNGRRNRYNFGCEAFSVVGSYPDEALDIVLLARFSRSILSRVGNGRRKLCCSSAFSLDTATEFSAESLWEDLKPAILYLSPKELKLVHNAFMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIVAGLLHDTVEDTNFVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNKNDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFIYTNAEDYAKVKRRVSELYKEHEKELVEANKILMKKIQDDQFLDLLTVKTEVRAVCKEPYSVYKAVLKSRSSISEINQVAQLRIIIKPKPCVGVGPLCNSQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSAMPSSKSTRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVTDSEGDSESEQLSNGSKHTWGKMFVNGVEISTPGRSETVLQSTNGSVWTPKINGKHNKHVQHENFKAKGELLLQGNLVAKMIQVNIPRYKEVLPGLESWQAQKIASWHNIEGHSIQWLSVVCIDRRGMMADVTTALATAGITICSCVAEMDGGRGMAVMLFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLMEDSGILEC* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0508 881 Gene3D - 558 633 IPR012675 -
Apr4g0508 881 SMART RelA_SpoT_2 378 500 IPR007685 GO:0015969
Apr4g0508 881 ProSiteProfiles TGS domain profile. 561 624 IPR004095 -
Apr4g0508 881 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 881 - -
Apr4g0508 881 SUPERFAMILY ACT-like 794 853 IPR045865 -
Apr4g0508 881 SUPERFAMILY TGS-like 552 624 IPR012676 -
Apr4g0508 881 Gene3D - 794 860 - -
Apr4g0508 881 SMART hd_13 167 287 IPR003607 -
Apr4g0508 881 Coils Coil 333 360 - -
Apr4g0508 881 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Apr4g0508 881 SUPERFAMILY HD-domain/PDEase-like 137 324 - -
Apr4g0508 881 Gene3D Hypothetical protein af1432 124 324 - -
Apr4g0508 881 CDD TGS_RSH 566 624 IPR033655 -
Apr4g0508 881 SUPERFAMILY Nucleotidyltransferase 328 499 IPR043519 -
Apr4g0508 881 Pfam TGS domain 565 624 IPR004095 -
Apr4g0508 881 CDD NT_Rel-Spo_like 368 488 IPR007685 GO:0015969
Apr4g0508 881 CDD HDc 169 300 IPR003607 -
Apr4g0508 881 ProSiteProfiles ACT domain profile. 794 865 IPR002912 -
Apr4g0508 881 Gene3D Beta Polymerase, domain 2 326 480 IPR043519 -
Apr4g0508 881 Pfam HD domain 152 309 - -
Apr4g0508 881 Pfam Region found in RelA / SpoT proteins 378 494 IPR007685 GO:0015969
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0508 Apr-Chr4 4236888 4245146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0508 181 496 EF-hand Containing Proteins AT3G17470 31.288 1.20e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0508 K00951 - gmx:100814134 1588.93