Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0489 ATGTTCTCCACATCTCTCTCATGTGCTTCGCCTGTGAAACAAAACTCAACTCTGTTTCAATGGCTGAGATTCATTTTCCTTTCTCCCTGTCCTCAGAGAGTTCTCTTGTCTGCCGTTGATACTCTACTATTGCTCTTTCTCTTTGTGTTTGCTGTCACAAAGCTCTGTAAAAGGTTCACCTCTCATGGCCGTTCCAACAACGACCTCAACAAGCCTTTCATTAGAAACAACATATCCACTTTCAGAACTACTCTGTGGTTTAAGTTAACTTTGACTGTAACGGTTGTTTTGGCTGTAGTTTACACCATTGCTTGCGTTCTCGTCTTTAGCAGTTCCACCAACGTGCCGTGGAAGCAAGTTGATGAAGCTTTTTGGATCGTCCAGGCCGTAACACATGCAGTGCTTGCAGTGTTGATCATTCACGAGAAAAAATTCGAAGCTGTAACACACCCCCTGTCCGTTCGAGTTTACTGGGTTGCGAATTTCGTTGTCATTTCCTTGTTCACGGTTTCTGGGGTTGTACGTTTTGTGTCTGTGGATGAGGATGGAGCCAAAAGCTTCGTCATTGAAGTGGATGACGTGGTCTCTTTTATTTCACTCCCTCTGTCATTGTTTCTTCTTTTTGTGGCGGTTAAAGGAGCCACTGGTATTGTGTTGTCGACAGAAGAAAAAAAGTCACTTGTTGACGAGGAAACGAGGTTGTATGAAACAAAATCCGAGGTTACTGGCTTTGCTTCAGCTTCTCTACTGTCCAAGGCATTTTGGATTTGGATAAACCCTTTGTTGAGTAAAGGGTACAAGTGGCCACTGAAAATTGATGATATTCCAACACTTTCCCCAGACCATAGAGCTGAGAAGATGTCACTTCTCTTTGAATCAAAATGGCCTAAAACAGACGAGAGATTGAAGCATCCAGTTAGAATCACATTGCTTAAGTGCTTTTGGAAGGAGTTGGCCATCACTGCCATTCTTGCAATTATTAGGCTGTGTGTCATGTTTGTGGGGCCAGTTCTCATACAAAGCTTTGTAGATTATACGTCAGGGAAGAGAAGCTCTGTGTATGAAGGGTACTATCTCGTGTTGATTCTTCTTGTTGCCAAGATCATAGAAGTGTTGACCACTCACCATTTCAACTTCAACGCTCAGAAACTTGGGATGCTCATACGGTGCACGCTTATACCTTCTTTGTACAAAAAGGGATTGATGCTATCATTCTCAGCTAGGCAGGACCATGGTGTGGGTAGCATCGTGAATTACATGGCTGTTGATGTTCAGCAACTTTCTGATATGATGCTTCAGTTGCATGCTGTGTGGATGATGCCATTTCAAGTTGGTATTGGTTTATTTCTACTTTACGATTGTCTAGGTGCCTCTGTAGTGACTTCTTTTCTTGGTCTTCTTGGGATATTAGTGCTTGTTGTGCTTGGTATCCGGAGAGATAGGGTTTTCCAATTGAATGTGATGAAAAACCGTGACTTGAGAATGAAAGCTGTGAATGAGATGCTTAGTTACATGCGTGTGATAAAGTTTCAGGCTTGGGAGGAGCATTTCAACGGGAGGATTATGGGATTCCGTGAGACAGAGTTTGAGTGGCTTACCAAGTTGATGTTCTCCATTTGTAGCAATATTGTTGTGATGTGGAGCGCACCGATATTGGTATCAACTCTGACGTTTGGTACAGCTATTTTGCTGCGAGTTCCGCTTGATGCAGCCACTGTCTTCACGACTACTTCTATCTTCAAGATCTTGCAGGAGCCTGTTATGACATTCCCACAGTCTATGATATCTCTTTCACAAGCAATGATATCACTGGGGAGGTTAGATAGATTCATGTTGTGTAGGGAATTGTCGAATGATTCAGTTGTGAGAGAGGAAGGCAGTGGTGGACAAACCGCAGTGGAGATCATAGATGGTACCTTTAGTTGGGATGATGAAAACATGCTGCAGGACTTGGAAAATATTGATTTGGAGATCAAAAGGGGGGAGCTTACAGCAATTGTTGGGACTGTGGGGTCAGGAAAGTCATCTCTCCTAGCATCAATTCTTGGTGAGATGCACAAAATTTCTGGAAAGGTTCGGGTTTGTGGTAGTGTTGCCTATGTTGCACAAACATCTTGGATTCAGAGTGGCACCATTGAAGAAAACATTCTCTTTGGTTTACCAATGGATAGGCATAGGTACAATGAAGTTATCAGGGTGTGTTGCTTGGAGAAAGATTTGGAAATGATGGATTATGGAGATCAAACAGAAATTGGAGAGCGTGGTATTAACCTGAGTGGGGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTATATCAAGATTCTGATATATATCTCCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGCTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAAAGGCAAGACCATTGTTCTTGTAACACACCAAGTGGATTTCCTACATAATGTGGATCTTATATTAGTGATGAGGGACGGGATGGTAGTCCAATCAGGGAAGTATGATGATCTACTAGATGCTGAAATGGATTTTAAAGCTCTGGTAGATGCACATGAGACTTCTATGGAACTAGTAGAGCAGGGTGTGGTCTTACCTGGTCAAAATTTGAACAAACCAACAAAATCTCCAGAGGGAATTTCTATTTACAAGGGGACTGGTGGTGAAAGCAATTCTCTTGACCAGACTGAGCCTGGCAAGAATAGTTCTAAACTCGTCAAAGAAGAGGAGAGAGAAACTGGCAAAGTGAGCTTACATATCTACAAACTCTACTGCACTGAGGCTTTAGGTTGGTGGGGTGTTGCAATAGCATTGCTTCTTTCTTTGTTATGGCAAGCGTCTTTGATGGCAAGTGACTATTGGCTGGCATATGAAACCTCAGAAGAGGGTGCCAAAATGTTTAACCCCAATTTGTTCATTTCTATCTATGCAATTATTACTGTTGTTTCAGTCATTTTGGTGATCGCAAGATCCTACTGCATTACAATCTTGGGGCTAAAAACAGCACAGAGTTTCTTCACACAAATTCTTCGTAGCATCTTGCATGCGCCCATGTCTTTCTTTGACACTACTCCATCTGGGAGAATTCTAAGTAGGGCATCCACAGATCAGGCCAATGTTGATGTGTCTCTCCCCATGTTCACAGGAATTGTTATTGGCATGTACATGTCAGTACTCGCCATCTTCATCATCACCTGTCAAAATTCTTGGCCTACAGTGTTATTGATAATTCCTCTTGTTTGGTTGAATATATGGTATCGGGGTTACTATCTTGCATCATCTCGTGAAATAACTCGCTTGGATTCAATTACCAAAGCACCGGTAATTCATTACTTCTCCGAAAGCATTGTGGGGGTCATGACAATCCGTGCATTCGGAAAGCAAAAGAGTTTTTGTGAAGAAAATCTCAAACGAGTGAATGCTAATTTGCGAATGGATTTCCACAACAACGGTTCTAATGAGTGGTTAGGAGTAAGATTAGAATTTCTAGGAACCTTTGTCTTCTGCATTTCTACTTTGTTCATGATCATCTTGCCCAGCGGTATCATAAAGCCAGAAAATGTTGGTTTATCTCTCTCTTATGGATTGTCCTTAAATTCGGTCATGTTCTTTTGCGTATACATGAGTTGTTTTGTCGAAAACAAAATGGTGTCTGCTGAGAGGATAAAGCAGTTTACAAATATTCCATCGGAACCCGCTTGGAATGTCAAGGATCGTTTGCCTCCTTCAAATTGGCCAGATCAAGGCAATGTAGATATCAAAGACCTGCAGGTCAGATATCGTCCAAACACCCCTCTGGTTCTTAAAGGCATCACTTTAAGCATTAGTGGAGGTGAAAAGATTGGCGTTGTTGGTCGAACTGGAAGCGGAAAATCAACTTTGATTCAAGTCTTCTTTAGGCTGGTGGAACCTTCAGGAGGGAAAATAATAATTGATAGTATTGACATATCTGTCTTGGGGCTTCATGATCTTAGATCACGGTTTGGTATCATTCCTCAAGAGCCCGTCCTTTTTGAAGGAACTGTCAGAAGCAACATTGATCCAATTGGACAGTACACAGATGATGAAATATGGAAGAGCTTGGAACGCTGTCAACTAAAAGAGGTTGTTGCTGCTAAGCCTGACAAGCTCGACTCTTTGGTGGTGGATAATGGAGAGAACTGGAGTGTGGGGCAGAGACAATTGCTTTGTCTGGGACGCGTGATGCTTAAGCGAAGCCGAGTGTTGTTTATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACAGATGGTGTAATACAAAAGATCATTAGAGAGGACTTCGCAGCTTGTACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTGATAGAGTTTTAGTTGTAGATGCAGGCCATGCAAAAGAATTTGATAACCCCTCCAACTTGCTTCAGACTCAATCTCTCTTTGCAGCATTAGTTCAAGAGTACGCCAACCGTTCAACTGGACTCTAA 4497 0.4245 MFSTSLSCASPVKQNSTLFQWLRFIFLSPCPQRVLLSAVDTLLLLFLFVFAVTKLCKRFTSHGRSNNDLNKPFIRNNISTFRTTLWFKLTLTVTVVLAVVYTIACVLVFSSSTNVPWKQVDEAFWIVQAVTHAVLAVLIIHEKKFEAVTHPLSVRVYWVANFVVISLFTVSGVVRFVSVDEDGAKSFVIEVDDVVSFISLPLSLFLLFVAVKGATGIVLSTEEKKSLVDEETRLYETKSEVTGFASASLLSKAFWIWINPLLSKGYKWPLKIDDIPTLSPDHRAEKMSLLFESKWPKTDERLKHPVRITLLKCFWKELAITAILAIIRLCVMFVGPVLIQSFVDYTSGKRSSVYEGYYLVLILLVAKIIEVLTTHHFNFNAQKLGMLIRCTLIPSLYKKGLMLSFSARQDHGVGSIVNYMAVDVQQLSDMMLQLHAVWMMPFQVGIGLFLLYDCLGASVVTSFLGLLGILVLVVLGIRRDRVFQLNVMKNRDLRMKAVNEMLSYMRVIKFQAWEEHFNGRIMGFRETEFEWLTKLMFSICSNIVVMWSAPILVSTLTFGTAILLRVPLDAATVFTTTSIFKILQEPVMTFPQSMISLSQAMISLGRLDRFMLCRELSNDSVVREEGSGGQTAVEIIDGTFSWDDENMLQDLENIDLEIKRGELTAIVGTVGSGKSSLLASILGEMHKISGKVRVCGSVAYVAQTSWIQSGTIEENILFGLPMDRHRYNEVIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDSDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTIVLVTHQVDFLHNVDLILVMRDGMVVQSGKYDDLLDAEMDFKALVDAHETSMELVEQGVVLPGQNLNKPTKSPEGISIYKGTGGESNSLDQTEPGKNSSKLVKEEERETGKVSLHIYKLYCTEALGWWGVAIALLLSLLWQASLMASDYWLAYETSEEGAKMFNPNLFISIYAIITVVSVILVIARSYCITILGLKTAQSFFTQILRSILHAPMSFFDTTPSGRILSRASTDQANVDVSLPMFTGIVIGMYMSVLAIFIITCQNSWPTVLLIIPLVWLNIWYRGYYLASSREITRLDSITKAPVIHYFSESIVGVMTIRAFGKQKSFCEENLKRVNANLRMDFHNNGSNEWLGVRLEFLGTFVFCISTLFMIILPSGIIKPENVGLSLSYGLSLNSVMFFCVYMSCFVENKMVSAERIKQFTNIPSEPAWNVKDRLPPSNWPDQGNVDIKDLQVRYRPNTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGKIIIDSIDISVLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDDEIWKSLERCQLKEVVAAKPDKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRVLFMDEATASVDSQTDGVIQKIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGHAKEFDNPSNLLQTQSLFAALVQEYANRSTGL* 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0489 1498 Pfam ABC transporter transmembrane region 941 1195 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0489 1498 Pfam ABC transporter transmembrane region 319 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0489 1498 Pfam ABC transporter 1273 1421 IPR003439 GO:0005524
Apr4g0489 1498 Pfam ABC transporter 651 784 IPR003439 GO:0005524
Apr4g0489 1498 Gene3D ABC transporter type 1, transmembrane domain 307 612 IPR036640 GO:0005524|GO:0016021
Apr4g0489 1498 Gene3D ABC transporter type 1, transmembrane domain 903 1237 IPR036640 GO:0005524|GO:0016021
Apr4g0489 1498 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 78 1497 - -
Apr4g0489 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 633 856 IPR003439 GO:0005524
Apr4g0489 1498 CDD ABC_6TM_ABCC_D1 320 607 IPR044746 GO:0140359
Apr4g0489 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1219 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0489 1498 SMART AAA_5 660 841 IPR003593 -
Apr4g0489 1498 SMART AAA_5 1282 1466 IPR003593 -
Apr4g0489 1498 Gene3D - 613 868 IPR027417 -
Apr4g0489 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1256 1490 IPR003439 GO:0005524
Apr4g0489 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 855 IPR027417 -
Apr4g0489 1498 SUPERFAMILY ABC transporter transmembrane region 936 1236 IPR036640 GO:0005524|GO:0016021
Apr4g0489 1498 CDD ABCC_MRP_domain2 1254 1474 - -
Apr4g0489 1498 CDD ABCC_MRP_domain1 633 832 - -
Apr4g0489 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 319 599 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0489 1498 Gene3D - 1239 1490 IPR027417 -
Apr4g0489 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1249 1489 IPR027417 -
Apr4g0489 1498 MobiDBLite consensus disorder prediction 891 905 - -
Apr4g0489 1498 ProSitePatterns ABC transporters family signature. 758 772 IPR017871 GO:0005524
Apr4g0489 1498 CDD ABC_6TM_ABCC_D2 939 1231 IPR044726 GO:0140359
Apr4g0489 1498 SUPERFAMILY ABC transporter transmembrane region 309 611 IPR036640 GO:0005524|GO:0016021
Apr4g0489 1498 MobiDBLite consensus disorder prediction 891 913 - -
Apr4g0489 1498 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 78 1497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0489 Apr-Chr4 4078266 4088739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0489 588 849 Calmodulin-binding Proteins AT2G36910 30.824 9.80e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0489 - K05666 gmx:100808752 2350.86