Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0485 ATGCTTCCTCTTTCCCTTCTCAAAACAGCTCAAGGCCACCCTATGTTGGTGGAACTGAAGAATGGGGAAACTTATAACGGCCATTTGGTTAACTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACCTCTAAAGATGGAGATAGGTTTTGGCGGATGCCTGAATGCTACATACGAGGGAATACAATCAAGTACCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGATCGCAAACCACCTGGTGTGGGACGTGGAAGGGGAAGAGGCAGAGAAGATGGTGCTGGTGGACGGCAACCAAAAGGAATTGGGCGTGGTCTTGATGATGGTGGTACCAAGGGAGCTGGAGGAGGTCGAGGCAAGGGTGGCCCCGGTGGAAAGCCGGGTGGAAACAGAGGTACAGGGCGAGGTAGAGGTTGA 453 0.5033 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGAGGRQPKGIGRGLDDGGTKGAGGGRGKGGPGGKPGGNRGTGRGRG* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0485 150 MobiDBLite consensus disorder prediction 79 150 - -
Apr4g0485 150 MobiDBLite consensus disorder prediction 79 109 - -
Apr4g0485 150 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Apr4g0485 150 Pfam LSM domain 6 70 IPR001163 -
Apr4g0485 150 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 138 IPR027141 GO:0006396
Apr4g0485 150 SMART Sm3 5 71 IPR001163 -
Apr4g0485 150 Gene3D - 1 83 - -
Apr4g0485 150 PANTHER SM-LIKE PROTEIN LSM4 1 138 - -
Apr4g0485 150 SUPERFAMILY Sm-like ribonucleoproteins 3 128 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0485 Apr-Chr4 4037953 4040153 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0485 K12623 - tcc:18613544 212.231