Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0479 ATGGCGGTGGTTGCAGTGCAGCAATTCCTCTGTTTCTCAGAATCAAATTGGAGAAACATTACGAGGCCATGCTTCCCCCCTCGCAGCTCCATTCTTCTACGTTCACGCAAAAAGATTCATTTTTCACTCATTTCATGTTCTTCATCGCAGACCCCAGAAGCTGATACTGAAACTGCTGAATCTTGCGTCAATTTGGGTCTTCAGCTTTTCAAAAAAGGACGGGTTAAAGATGCTTTAACCCAGTTTGAAACAGCACTTACCTTGAATCCTAATCCTGTGGAGGCCCAAGCTGCTTTCTATAACAAAGCTTGCTGCCATGCATACAGAGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGTACTGCTTTGAGGGAATACAACCTAAAATTTGGTACAATTCTCAATGATCCTGACTTAGCCTCCTTCAGAGCTTTACCTGAATTCAAAGAACTACAAGAAGAGGCCAGGCTGGGTGGGGAAGATATTGGCTACAGTTTTCGAAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCACTGACAGCAGCTGCAGGAATATCTTTATTTTTTACTGTGCCTAGGCTATTTCGTGCAATTAATGGTGGAGATGGTGCTCCTGATCTCTTGGAAACTGCTGGGAATGGTGCCATTAACATTGGAGGTATTGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAGCTTGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAACCGTGTAGTTGAACTTGTGCAGCTACGGGACACAGTTAGGCCAGTTATAGTAGCAGGAAAAAAGGAAACAGTATCTTTGGCAATGCAAAGAGCAGAGAGATTTCGGACTGAGCTCCTTAGACGTGGTGTTCTGTTAGTTCCTGTAATCTGGGGAGAAGGTAGGGAGATAAAAATTGAGAAGAAAGGTTTTGGTGTTCAGCCAAAGGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGAAAACACAGTCCATAACTGCAAAATCAAAGTTGAAAGCTGAAATTAGGTTCAAGGCTGAGATTGTATCACCAGCGGAATGGGAACAGTGGATAAGAGATCAGCAGAACTCCGAAGGAGTTGTACTTGGTGAAGATGTATACATAATACTACGCTTGGATGGGCGGGTTCGAAGATCAGGAACAGGTATGCCTGACTGGCAGCAAATTGTGAAGGAGCTGCCACCAATGGAAGCAATTTTAAGCAAGCTTGAAAGATGA 1314 0.4323 MAVVAVQQFLCFSESNWRNITRPCFPPRSSILLRSRKKIHFSLISCSSSQTPEADTETAESCVNLGLQLFKKGRVKDALTQFETALTLNPNPVEAQAAFYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVALTAAAGISLFFTVPRLFRAINGGDGAPDLLETAGNGAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVIVAGKKETVSLAMQRAERFRTELLRRGVLLVPVIWGEGREIKIEKKGFGVQPKAAEALPSIGEDFEKKTQSITAKSKLKAEIRFKAEIVSPAEWEQWIRDQQNSEGVVLGEDVYIILRLDGRVRRSGTGMPDWQQIVKELPPMEAILSKLER* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0479 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 36 437 - -
Apr4g0479 437 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Apr4g0479 437 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Apr4g0479 437 Pfam Tetratricopeptide repeat 59 91 IPR013105 -
Apr4g0479 437 Gene3D Tetratricopeptide repeat domain 46 144 IPR011990 GO:0005515
Apr4g0479 437 SUPERFAMILY TPR-like 53 125 IPR011990 GO:0005515
Apr4g0479 437 SMART tpr_5 59 92 IPR019734 GO:0005515
Apr4g0479 437 SMART tpr_5 96 129 IPR019734 GO:0005515
Apr4g0479 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 36 437 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0479 - - gmx:100784188 786.563