Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0474 ATGAAGGGTGGACTCACAGCGAGAGCAATTGATCTACTACTGAAGGATTTCTGCCATAGTAGGATTCAGGTTAAGCAGATTCTAGCGCAACTGATCCTTCAAAACCTGCATTCCAACACCTCCATTGCTTTCCGATTCATCATCGCATGCCAATCTCACAACCTTCTCAATTCCGCTCTTCTCCTCTACACCACATTCCTTCCCTCAAATCACTACCCACACCCAAATGTCTTCATCTTCAACCACCTCATCAGAGCCTTCTCCTACTCCCAAATCCCTCAAACCCCTCTCTTTATCTACTCCCGCATGCACCGTAACTCCATTCTCCCCGACCATTACACCTTCCCTTCCCTCTTCAAGTCCCTCTCTGACTCTCGCCACTTCTTTCAAGCCCAATGCGTTAATACCCATGTCATCAAACTCGGTCATCAGCATAATATTTACGTACAAAACTCCCTTCTTGACGTGTTCGCTTCGTGTGGCCATGTGGCACTTTGTCGACGCGTGTTTGATGAAATGCATGAGAGGGATGTTGTTTCGTGGAGTGTGTTGATCACGGGGTACCGTAATGTTGGGTGCTATGATGATGCTTTGCTTGTGTTTGAGCAGATGCAATATGCGGGTGTGGTGCCTAATAGGGTCACTATGATAAATGCTTTGGCTGCTTGTGCTAAATCTGGAGCTGTTGAAATGGGGACGTGGATACATGATTTTGTGAGGAGGAATGGATGGGGATTGGATGTGGTACTGGGGACAGCGTTGATTGAGATGTATGCAACGTGTGGAAGAGTGGAAGAGGGGTTGAGAGTTTTTTGTAGCATGAAGGAAAGGAATGTGTTTACTTGGAATGCGGTTATTAAAGGGCTGGCTTTGGCTAAGAGTGGGGACGAGGCGATTATGTGGTTTAATAGAATGGAGAAGGAGGGAGTTAGAGTTGATGAAGTGACCTTGGTTGCTGTTCTTTCTGCGTGTAGTCACTCGGGTTTGGTGGAAAAGGGTCGAGAGATTTTCGGTTTGTTGGTTGATGGGAAGTATGGATTTTATCCCAATGTCAAACACTACGCTTGTATGGTTGACATGTTAGCACGTTCGGGTCGTTTGCAAGAGGCTATTGAGTTCATGGGACGAATGCCTTTTGAAGCGACCAAAGTTATGTGGGGTTCCTTGTTGGTTTGTTCCAAAGCTCAGGGTTACTTGGAATTGGGGGAGTTGGCAGCTAGAAAGCTTATTGAATTGGAGCCGAATAACCCTGCTTATTATGTTCATTTGTCAAACCTGTATGCGGCAATGGGAAGATGGAGCGATGTTGAGAAAGTAAGGGGAATGATGAAAGATAGACAATTGAACAAGGACTTGGGCTGTAGTTCTGTGGAGGTTAAACACCGAGGGCATGTTGGTGAACATTTGGCATAG 1413 0.4607 MKGGLTARAIDLLLKDFCHSRIQVKQILAQLILQNLHSNTSIAFRFIIACQSHNLLNSALLLYTTFLPSNHYPHPNVFIFNHLIRAFSYSQIPQTPLFIYSRMHRNSILPDHYTFPSLFKSLSDSRHFFQAQCVNTHVIKLGHQHNIYVQNSLLDVFASCGHVALCRRVFDEMHERDVVSWSVLITGYRNVGCYDDALLVFEQMQYAGVVPNRVTMINALAACAKSGAVEMGTWIHDFVRRNGWGLDVVLGTALIEMYATCGRVEEGLRVFCSMKERNVFTWNAVIKGLALAKSGDEAIMWFNRMEKEGVRVDEVTLVAVLSACSHSGLVEKGREIFGLLVDGKYGFYPNVKHYACMVDMLARSGRLQEAIEFMGRMPFEATKVMWGSLLVCSKAQGYLELGELAARKLIELEPNNPAYYVHLSNLYAAMGRWSDVEKVRGMMKDRQLNKDLGCSSVEVKHRGHVGEHLA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0474 470 Gene3D Tetratricopeptide repeat domain 231 344 IPR011990 GO:0005515
Apr4g0474 470 Gene3D Tetratricopeptide repeat domain 345 467 IPR011990 GO:0005515
Apr4g0474 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 460 - -
Apr4g0474 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 277 IPR002885 -
Apr4g0474 470 SUPERFAMILY TPR-like 180 436 IPR011990 GO:0005515
Apr4g0474 470 Gene3D Tetratricopeptide repeat domain 13 139 IPR011990 GO:0005515
Apr4g0474 470 Gene3D Tetratricopeptide repeat domain 140 230 IPR011990 GO:0005515
Apr4g0474 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Apr4g0474 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Apr4g0474 470 Pfam PPR repeat 354 377 IPR002885 -
Apr4g0474 470 Pfam PPR repeat 151 177 IPR002885 -
Apr4g0474 470 Pfam PPR repeat 179 209 IPR002885 -
Apr4g0474 470 Pfam E motif 399 458 IPR046848 -
Apr4g0474 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Apr4g0474 470 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Apr4g0474 470 TIGRFAM PPR: pentatricopeptide repeat domain 280 314 IPR002885 -
Apr4g0474 470 TIGRFAM PPR: pentatricopeptide repeat domain 252 279 IPR002885 -
Apr4g0474 470 TIGRFAM PPR: pentatricopeptide repeat domain 149 179 IPR002885 -
Apr4g0474 470 PANTHER - 12 460 - -
Apr4g0474 470 Pfam PPR repeat family 277 325 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0474 Apr-Chr4 3983212 3984641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0474 108 467 Glycoside Hydrolase AT3G49170 36.785 1.73e-70 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0474 - - gmx:102664320 682.174