Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0440 ATGGCTGACGGTTCTTCACCTCACTCTCAACCTTTATCACTACTAGCAGGAGATAAAGTTAAAGATGCAAATCAAGATGATCGGTGTAGGGAAACTGAACTCTTCGAGGACACCTTGGCACTCAATAATCATTTCACTGAAATGGAGCTTGAATATCTCAATCTGAACACTGAGATTGTAGAGGATTCAGACCCTGCAGAAAATGTGACAACCAACCCAGTATGTGAGTACGAACAAGAAGTGGTGCTTGATAGTGAGGACGAAGAAATGAATAATAGAGATGCAGCAACTGTTGCCAAAGGATTTATTGAGGATGAAACTAGTCCAACAGTGAAAAATCCTTTGATGCTCCAGAAGAGGCTATACAAGCCACCTTGTGAGCAAGCAGACTCAAATGCCACCATTTTTGGAAAATCTGCTGCTGGGGCCAAAGTAGCTTCCGTTGATGCTGACAGCTTTGATAACGACAACCATTTATATCTCTCTGCAAGGTTAAATCACATCCACTCACCAGAGCCTGGGGATTCAACCCAGGCTGCACTTGGCTTTGTGGATCAGTATTTGTCATTGAATGATGTGGATTTGTTTCAAGGAATTCATCGTAGAAAGACCACCAGGGAGAAATCACCTCATGTCCTGAGTGCAAAAGGACCACTAAATCTGGCTAAGAAAATTAAAGTTCAAACTCAAAATGAAGAAAAAGAACCTTTCAAATGGGTTGACAGTGAACAAAATGACGACAAAGCTGGTTTGTTTGGTAAAAAAATTAAAGCACCTCCAAACTTTGGAAGCTACAAACAGACATATACACGAAGAAGACAGAAAAAAGGTGGTCATCTTCAGAGCCAAGGAAACTGCAGTGCAAGCAGTAGATGTGATGAGACTTTAGGCCAAGGACCAAGAATGGCAACTGAAAATAATAACTCTATCAATGAGTTGGATGTTCAGTCAAGTGCTATGAGAGAGAACTTTAATGTTTATTCCAGTGTAACACATATAGGAGACATGTCTGATATTGGTTTAGACACTCAAATAGCTGCTGAAGCTATGAATGCCTTAGCCTTTTTGCACCCTTCTGGCTGTCATTTCAATGATACTCACCTACCAGAGAATGCATCTGATGGCTCTTTAAGTGATTTCATAGAGAATGAAGGTCTTCTGAAAAATTCTTCATATAGACAGAATCCTGGTTTACATTCTGTCACAATAGAGTCAAATAAGAAAAATGCATCTTCCTCTAGATTTAGTAATATAACTTCTAGCTCATCTTGCAAACACACTGACAAGCAGGAGCCAAATCTTGTCTCAGAAAAAATGAAAAAACTTATGAAAAGCAAGTTAACTGCTGAGGGACAGTTTGAAAATAATACTAGTTTGCCAATATGCAGTAAACATGCATCACTTGAAGAGGATCACTCACTAGGAGCGCATGTAAGTTTTCAGTCTACTACAAAGGAATGCACAAATTGGAACAATGAGAGCAGACAGACATGGATCAAAGATCAACCAAGCTATCCTACAGAGAGGAAGAATAATGTCAAGGATAAGAGTATTATTAGACACAAGAGGAAGGGGAATGGTTTAGTAGCATCTGATCCAGTGAAGTTGGGTGTTGGGACAAAGCGTCTTAAATTGCCTACCAATTTGTGTGCAATTGCTAGGAAGAGCGGGTTGAATCATCAGGCTCAAGTTAGTCCACAATTATCTGCAACCAGCACTCTTTTAAGGATTGACTCTTTCTTTTATCCAAAAAGACCAAGAGGGAAACGAAAGGGGCCTAGTGTGCAAATCAATCTCAATGCACCTACAGATTTGTGCATTGATGAAAAAGAAAGCAATGCCTTCTCCATTGGAAGTCTGGAAGACCAAGATGATGTGGATAAATCATGTTTTCCTCACAACCACCCACTTTGCAATGCTTCATGTGTTGACAATGGCAGATGCATGTTACTGGGGAACTCTGTTCAACCAGGCCCAGCTAGTGATGCAATGAAATTTGAAAACCTGCTTGATATGCATCCTTTATTGCTGGCACATGTTGAAATATCATCAAACAAGAGTGTTGCACAATCGAGATCAGAAATTCCAGCTACAGTTGCCCCAAGCAAAGGCATAAATATTTCAAATGCTAACCATACTTACACTGGGCACCACAAAAAGCCATGTGACAAAAACCTGCCAAAGACTTCGCTTTTGAAGGAGCTTATCAGAATAGGAGGCCCTGACTCCACTTCAGATATGATGTGGAAAGATCTTAGACACCGGAGAGATATGACAGATGTTAGAATTCTGTTTAGCCAACATTTGCATGACAGTATCATCAAGCAGCAAAAAAAGATCTTGGCACGTCTCAATATATCTGTTGCAGCAAGCTCAATGGAGGCCACACATTTCGTAGCAGACAAATTTACACGCACAAAGAATATGTTGGAAACAATGGCCCTTGGGAAATTAGTCGTGACACACTTATGGCTTGAGAGCTGTGGACAAGCCAATTGCTTTATTGATGAGAAAAATTACATTTTGAGGGATACAAAAAAGGAAAAGGAAATAGGCTTTAGCATGCCTGTTTCTCTTGCACAAGCAAGACAGAAGCCACTCCTAGAGGGTAAAAGAGTCTACATCACGCCACATGTTAAACCTGATAAGGAAGTGATTACAAGTTTGGTCACTGCTGTTCATGGACAGGTAGTGGATGAAAGTCAGATATGTTCACACAAGAATGATAATACCTTAGATGATTTGTTGATTATTTCTTGTGAAGATGACTATGCGATATGCCACCATTTCCTTGAGAGAGGAACTTCTGTTTACAGTTCAGAGCTTGTTCTAAATGGAATCGTAATCCAAAAATTGGAACTTGAGAGACATCAACTCTTCATGAATCAAGTTACAAGGAATAACCCAAGTACGTGTAAACGGTATGGGAAGGTTTACAGTAGGCGTTGA 2949 0.4012 MADGSSPHSQPLSLLAGDKVKDANQDDRCRETELFEDTLALNNHFTEMELEYLNLNTEIVEDSDPAENVTTNPVCEYEQEVVLDSEDEEMNNRDAATVAKGFIEDETSPTVKNPLMLQKRLYKPPCEQADSNATIFGKSAAGAKVASVDADSFDNDNHLYLSARLNHIHSPEPGDSTQAALGFVDQYLSLNDVDLFQGIHRRKTTREKSPHVLSAKGPLNLAKKIKVQTQNEEKEPFKWVDSEQNDDKAGLFGKKIKAPPNFGSYKQTYTRRRQKKGGHLQSQGNCSASSRCDETLGQGPRMATENNNSINELDVQSSAMRENFNVYSSVTHIGDMSDIGLDTQIAAEAMNALAFLHPSGCHFNDTHLPENASDGSLSDFIENEGLLKNSSYRQNPGLHSVTIESNKKNASSSRFSNITSSSSCKHTDKQEPNLVSEKMKKLMKSKLTAEGQFENNTSLPICSKHASLEEDHSLGAHVSFQSTTKECTNWNNESRQTWIKDQPSYPTERKNNVKDKSIIRHKRKGNGLVASDPVKLGVGTKRLKLPTNLCAIARKSGLNHQAQVSPQLSATSTLLRIDSFFYPKRPRGKRKGPSVQINLNAPTDLCIDEKESNAFSIGSLEDQDDVDKSCFPHNHPLCNASCVDNGRCMLLGNSVQPGPASDAMKFENLLDMHPLLLAHVEISSNKSVAQSRSEIPATVAPSKGINISNANHTYTGHHKKPCDKNLPKTSLLKELIRIGGPDSTSDMMWKDLRHRRDMTDVRILFSQHLHDSIIKQQKKILARLNISVAASSMEATHFVADKFTRTKNMLETMALGKLVVTHLWLESCGQANCFIDEKNYILRDTKKEKEIGFSMPVSLAQARQKPLLEGKRVYITPHVKPDKEVITSLVTAVHGQVVDESQICSHKNDNTLDDLLIISCEDDYAICHHFLERGTSVYSSELVLNGIVIQKLELERHQLFMNQVTRNNPSTCKRYGKVYSRR* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0440 982 ProSiteProfiles BRCT domain profile. 753 842 IPR001357 -
Apr4g0440 982 CDD BRCT_MDC1_rpt1 761 835 - -
Apr4g0440 982 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 16 969 - -
Apr4g0440 982 MobiDBLite consensus disorder prediction 1 25 - -
Apr4g0440 982 Gene3D BRCT domain 866 967 IPR036420 -
Apr4g0440 982 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 16 969 - -
Apr4g0440 982 CDD BRCT_PAXIP1_rpt6_like 867 953 - -
Apr4g0440 982 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 755 842 IPR001357 -
Apr4g0440 982 MobiDBLite consensus disorder prediction 403 429 - -
Apr4g0440 982 SUPERFAMILY BRCT domain 750 858 IPR036420 -
Apr4g0440 982 MobiDBLite consensus disorder prediction 403 434 - -
Apr4g0440 982 MobiDBLite consensus disorder prediction 700 722 - -
Apr4g0440 982 MobiDBLite consensus disorder prediction 700 715 - -
Apr4g0440 982 Gene3D BRCT domain 749 865 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0440 Apr-Chr4 3731900 3736583 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0440 - K14972 gmx:102659913 1448.72