Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0427 ATGGCGGTTTCCGAAGAAGAATGCTCTTCGGCGAAGCCTGGTCCCTCTTCGCCTTCCTCCTCCTCGCGTTACTACCTCTCTAAGTGCGTTCTCAGAGGAAGCGTCGTTCTTCAGGTCCTCTACGCTCACATTCGTTCTCCATCTTCTTACGACGTCGTTTTTGGCAAGGAGACATCTATTGAATTGGTGGTCATTGATGAGGATGGTAATGTTCAATCTGTTTGTGATCAACCTGTTTTTGGCACCATCAAAGATCTTGCTGTGTTGCCCTGGAATGAGAATTTTCGTTCACGTGATCCCCAGTTGTGGGGTAAAGACCTTTTGGTTGCTACATCTGATTCTGGGAAGCTGTCTTTGCTCACATTTTGCAATGAAATGCACAGGTTCTTTCCTGTAACACACATTCAACTGTCCAATCCTGGAAACACAAGGGATCTTCCTGGAAGAATGCTTGCAGTTGATTCCAGTGGTTCTTTTATTGCTGTCAGTGCTTTTGAAGATCGGCTGGCTCTTTTCTCTTTGTCAACAGCCAGTGGTGATATAATTGATGAGAGAATAGTATATCCTTCTGAGAGTGAAGGGATTGCGAGTACTTCCAGAAGCATCCAGAGAACGAGCATACGTGGTACCATTTGGAGCATGTGCTTTATTTCACAAGATTCCAGACAACCAAGCAAAGAGCATAATCCTGTGTTGGCTGTTATTTTAAATAGGAGAGGAGCACTTCTAAATGAATTGCTATTATTGGAATGGAATATTAAAGCACGTAAAATCTTTGTTATTTCTCAGTGTGTTGAAGCTGGGCCTCTGGCACATGACATTGTTGAAGTTCCAAATTCTGGTGGACTTGCATTTCTATTCAGGGCTGGTGATGTTCTCTTAATGGATCTTAGAGATCATCGCAACCCATCTTCTGTCTGTAAGACAAACTTAAACTTTTTACCCAATGCCATGGAAGAGCAGAATTATGTGGAAGACTCTTGTAAATTACATGATGTTGATGATGAACGCTTTAGTGTTGCTGCCTGTGCTTTGTTGGAGCTGAGTGATTTTGATCCTATGTGCATAGACAGTGATAATGGTGGTGCTAATTCTGGTTACAAGTACATATGTTCGTGGAGTTGGGAACCTGGAAATAATAAAGATCCTAGGATGATCTTCTGTGTAGATACTGGGGAATTTTTTATGATCGAAGTTTTTATTGATTCTGAAGGCCCTAAAGTTAATCTGTCTGAGTGTCTCTATAAAGGACTACCTTGTAAAACACTTTTGTGGGTTGAAGGTGGATATCTAGCTGCCCTTGTAGAAATGGGGGATGGTGTGATCCTGAAATTGGAAGATGGAAGGCTATGTTATACAAATCCTATTCAAAACATTGCACCAATCTTGGATATGGCAGTTGTGGATTATCATGATGAGAAGCATGGTCAAATATTTGCTTGCTGTGGTGTGGCACCTGAGGGGTCATTAAGGATTACTCGGAATGGTATTAATGTAGAAAAACTCCATAGGACTGCTTCTATATATCAAGGGGTAACTGGTACTTGGACTGTACGAATGAGAGTTACTGATTTGTATCATTCTTTTCTAGTTCTATCATTTGTTGAGGAGACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGACGTCACTGATTCAGTTGGTTTCCAACCTAATGTCTGTACGTTGGCATGTGGCCTTGTGAATGATGGTTTGCTTGTTCAGATCCATCAATCTACTGTTAAGCTTTGTTTGCCCACTAAGGCTGCTCATTCTGAAGGTATCCCTTTATCCTCTCCTATTTGCACATCTTGGTGTCCAGACAATGTGAATATCAGTTTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCAACCTCTAATCCGTGCTTTTTGTTTATCCTTGGGGTTAGATTGCTATCAGCTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTGCAGAATGAATTATCATGCATTTCCATCCCTGGACAAAAAAAAGAGCAAAAACAATCAAATTCATCCATTTCACCAAAAAATGATAGTTGCACCTCTTCTTTTCAAAGTGGAGTGGATGTCAATAAAACCTTTGTTATTGGCACACATAGGCCTTCTGTGGAAATTTGGTCTTTTGCACCAGATGGAGGAGTTACAGTAGCTGCTTGTGGGACAATTTCATTAACAAATACAGTGGGGACTGCTATAAGTGGCTGTGTACCTCAAGATGTACGGCTTGTAGTTGTTGATAAGTATTATGTTCTTGCTGGATTGAGGAATGGAATGCTCCTTCGCTTTGAGTGGCCGGCAGAATCATCTCCATCACCAATAAATGTGGTGGATACTGCTTTATCTTCTATTAATTTGGTAAATTCTGTGACTCATGCTTTTGACAAGAGAAATGACCTTCCTTGCACGCTTCAATTGATTGCTATTCGTCGCATTGGCATTACTCCAGTTTTCTTGGTGCCCCTGAGTGACACACTTGATGCTGATATAATTGCTTTGAGTGATAGGCCTTGGCTGTTGCATAGTGCAAGACACGGCCTTTCCTATACTTCTATCTCATTTCAACCATCCACACATGTGACTCCTGTATGCTCTGTTGAGTGTCCAAAAGGAATATTATTTGTTGCAGACAACAGTTTACATCTGGTGGAGATGGTCCACAGCAAGAGACTTAATATGCAGAAGTTTCATTTAGAGGGCACTCCACGGAAGGTTCTGTATCACAATGAAAGCAAGATGTTGCTTGTGATGAGGACTGAACTGAATTGTGGTACATGTTTGTCTGATGTATGTTGTGTGGATCCCTTTAGTGGGTCAGTACTGTCATCTTTTAGATTTGAACTTGGAGAAACAGGAAAATCCATGGAATTAGTAAGAATTGGAAGTGAGCAGGTGCTTGTGGTTGGAACTAGTCTGTCTTCTGGTCCAGCCATAATGCCCAGTGGTGAGGCTGAGAGTTGCAAGGGTCGTCTTCTTGTTCTCTGCCTTGATCATGTGCAAAATTCAGATAGTGGCTCAATGACGTTCTGTTCCAAGGCAGGTTCATCATCTCAAAAAACTTCTCCATTCCATGAAATTGTTGCATATGCTCCTGAACAGCTATCGAGCAGTAGCCTTGGCAGTAGCCCTGATGATAATAGTTCTGATGGCATCAAACTTGATGAAAATGAAGTTTGGCAGTTTCGACTGGCTTGTGCAACTAGATGGCAGGGAATGGCACTTGCAATCTGTCCTTATCTTGATCGTTACTTCTTGGCATCTGCCGGCAATACTTTCTATGTTTGCGGTTTCCCAAATGACAATCCCCAAAGAGTGAGGAGGTATGCTATGGGAAGGACGCGTTTCATGATAACATCTTTGACTGCACATTTTTCTAGAATTGCTGTTGGTGATTGTCGTGATGGTATCCTTCTATTTTCTTATCATGAGGTGACACTGAGGTTAGTCGCTGATTGCATTCTCATGGATGCTGATACAGCTGTTGTTTCAGATCGTAAAGGAAGCATTGCTGTTTTATGTACAGATCATTGGGAAGGTAACCCTGAACTAAAAAATGCAAGTCCAGAATGCAACTTGACATTAAGCTGCACATATTTCATGGCAGAGGTAGCCATGAGCATCAGGAAGGGCTCATATTCATACAGACTTCCAGCTGATGATGTTTTGCAAGGTGGCAATGGCCCCAAGACAAGTGTTGATTCACTACAAAATACTATTATTGCTAGTACTCTGTTAGGAAGCATAATAACCTTCATCCCTTTATCAAGGGAAGAATATGAGCTCTTGGAAGCTGTGCAAGCAAGACTTGTTGTCCATCATTTGACTGCGCCTGTTCTTGGAAATGATCATAATGAGTTTCGCAGTCGTGAAAATCCAGTTGGAGTACCCAAGATACTTGATGGTGACATGTTGACCCAGTTTCTGGAGTTGACGAGCATGCAGCAAAAGATCATTTTGTGTTCTGAGCCACCAGATATGGTTAAATCAAGTTTGAAGCCATTACTACCCCCCCATGTTCCTGTAAATCAGGTGGTTCAACTTCTTGAACGAGTTCATTATGCTCTGAACTAA 4083 0.4156 MAVSEEECSSAKPGPSSPSSSSRYYLSKCVLRGSVVLQVLYAHIRSPSSYDVVFGKETSIELVVIDEDGNVQSVCDQPVFGTIKDLAVLPWNENFRSRDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFFPVTHIQLSNPGNTRDLPGRMLAVDSSGSFIAVSAFEDRLALFSLSTASGDIIDERIVYPSESEGIASTSRSIQRTSIRGTIWSMCFISQDSRQPSKEHNPVLAVILNRRGALLNELLLLEWNIKARKIFVISQCVEAGPLAHDIVEVPNSGGLAFLFRAGDVLLMDLRDHRNPSSVCKTNLNFLPNAMEEQNYVEDSCKLHDVDDERFSVAACALLELSDFDPMCIDSDNGGANSGYKYICSWSWEPGNNKDPRMIFCVDTGEFFMIEVFIDSEGPKVNLSECLYKGLPCKTLLWVEGGYLAALVEMGDGVILKLEDGRLCYTNPIQNIAPILDMAVVDYHDEKHGQIFACCGVAPEGSLRITRNGINVEKLHRTASIYQGVTGTWTVRMRVTDLYHSFLVLSFVEETRILSVGLSFTDVTDSVGFQPNVCTLACGLVNDGLLVQIHQSTVKLCLPTKAAHSEGIPLSSPICTSWCPDNVNISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELSCISIPGQKKEQKQSNSSISPKNDSCTSSFQSGVDVNKTFVIGTHRPSVEIWSFAPDGGVTVAACGTISLTNTVGTAISGCVPQDVRLVVVDKYYVLAGLRNGMLLRFEWPAESSPSPINVVDTALSSINLVNSVTHAFDKRNDLPCTLQLIAIRRIGITPVFLVPLSDTLDADIIALSDRPWLLHSARHGLSYTSISFQPSTHVTPVCSVECPKGILFVADNSLHLVEMVHSKRLNMQKFHLEGTPRKVLYHNESKMLLVMRTELNCGTCLSDVCCVDPFSGSVLSSFRFELGETGKSMELVRIGSEQVLVVGTSLSSGPAIMPSGEAESCKGRLLVLCLDHVQNSDSGSMTFCSKAGSSSQKTSPFHEIVAYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLACATRWQGMALAICPYLDRYFLASAGNTFYVCGFPNDNPQRVRRYAMGRTRFMITSLTAHFSRIAVGDCRDGILLFSYHEVTLRLVADCILMDADTAVVSDRKGSIAVLCTDHWEGNPELKNASPECNLTLSCTYFMAEVAMSIRKGSYSYRLPADDVLQGGNGPKTSVDSLQNTIIASTLLGSIITFIPLSREEYELLEAVQARLVVHHLTAPVLGNDHNEFRSRENPVGVPKILDGDMLTQFLELTSMQQKIILCSEPPDMVKSSLKPLLPPHVPVNQVVQLLERVHYALN* 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0427 1360 Pfam CPSF A subunit region 934 1313 IPR004871 GO:0003676|GO:0005634
Apr4g0427 1360 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g0427 1360 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 19 1357 - -
Apr4g0427 1360 Gene3D - 497 894 IPR015943 GO:0005515
Apr4g0427 1360 Gene3D - 35 457 IPR015943 GO:0005515
Apr4g0427 1360 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 19 1357 - -
Apr4g0427 1360 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 664 IPR018846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0427 Apr-Chr4 3628756 3642666 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0427 K12830 - gmx:100806799 2355.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0427 4 3628756 3642666 Apr4g0427 4 3628756 3642666 ECH