Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0410 ATGAGCAGCACTAGTGCTAGTAACACGATTCTGGAAACGCTGAGGCTGAAGAGTCCCAAGCTCGTGCTACTGGAGTGTTGTTCCAAACTTGGGGACCTCAAAATCATCCATGCCCATATGCTGAGAACCCATGTCTTCTTCGACGTGTTTGCAGTGAGTCGCCTCGTTGCTTTCTGCATAAACTCCACTAACTTGCTGCATTACGCCATCAAAGTCGCGTCCCAAATACAGAACCCCAACCTCTTCATCTACAACGCATTGATTCGTGGTTGTTCCACCAGCGAAAACCCATCAAATTCCTTTCACTATTATATCAAAGCTCAACGCTTTGGTCTCTTTCCTGATAATATCACTCACCCTTTTTTGGTTAAGGCGTGTACTCAGCTTGAGTCTGCCGCTATGGGCATGCAAGCACATGGTCAAATCATTAAGTATGGATTTGAACAAGATTGTTATGTTCAAAACTCTCTCGTTCATATGTATGCTACTGTTGGGGATATAAAGGCTGCAAGGAGCATTTTTCAGAGGGTGCATCGTTTTGATATAGTCTCATGGACTTGCATGATTGCCGGTTATCATAGATGTGGGGATGTTGTGGCTGCACGTGAGTTGTTTGATAGAATGCCGGAGAAGAATTTGGTGACGTGGAGTACGATGTTCAGTGGTTATGCTCGGAATAATTGTTTTGATAAAGCGGTTGAGCTGTTTGAGGTTCTTCAGGCAGAAGGGGTGGTGGCTAATGAGACCGTGATGGTGGGTGTGATATCTTCTTGTGCTCATTTAGGGGCTCTTGATATGGGAGAGAAAGCTCATGAGTATGTGATGAGGCATAACTTGACTTTGAATCTGATTCTTGGGACAGCTATTGTTGACATGTATGCAAGATGTGGGAATGTTCAGAAAGCTGTTCAGGTTTTTGAGCAACTACCAGAAAAGGATGTGCTTTGTTGGACAGCTTTGATTGCTGGATTGGCCGCTCACGGTTATGCAGAGACAGCACTAGAGTATTTGTCAGAAATGGTGAGAACGGGGCTGGTTCCTAGAGACATCACATTCACTGCAGTGTTGACAGCTTGTAGCCATGGAGGACTGGTTGAGAGAGGTTTGGAAATATTCGAAAGCATGAAACGAGATCATGGGGTGGAACCAAGATTGGAGCACTATGGATGTATGGTTGATCTTCTTGGCCGTGCAGGGAAGCTGACAGAGGCAGAAAATTTTGTTCTTAAAATGCCTGTGAAGCCAAATGCTCCAATATGGGGAGCACTGCTAGGAGCTTGTAGGATCCACAGAAATGTAGAAGTTGGGGAAAGGGTGGGAAAGATTTTGATCCAGATGGAACCAGAACATAGTGGTTATTATGTGCTACTCTCCAACATATATGCTCGCACAAACAAGTGGAAAGATGTTACTATCATGAGACGGATGATGAAGGAAAAAGGAGTTAGAAAGCCACCTGGATATAGTCTCATTGAGGTAGATGGAAAAATTCATGAATTTACAATTGGAGATAAAACACACCCGGAAATAGAGAAAATAGAAAGAGTGTGGGAAGATATACTACAGCAAATAAAATTAGCTGGTTACGTTGAAAACACAGCTGAGACATTGTTTGACATTGATGAAGAGGAAAAGGAAGATGCACTTCACAGGCATAGTGAGAAGCTGGCCATTGCATATGGAATTATGAATATTCGACCTCCTACGCCAATCCGGATTGTGAAAAACTTACGTGTATGTGAAGATTGTCACACAGCTACCAAGTTGATTTCTAAAGTTTTCAAAGTAGAGTTGATTGTGAGAGACCGAAACCGATTCCATCATTTTAAAGAAGGCACATGTTCTTGCATGGATTACTGGTGA 1863 0.4316 MSSTSASNTILETLRLKSPKLVLLECCSKLGDLKIIHAHMLRTHVFFDVFAVSRLVAFCINSTNLLHYAIKVASQIQNPNLFIYNALIRGCSTSENPSNSFHYYIKAQRFGLFPDNITHPFLVKACTQLESAAMGMQAHGQIIKYGFEQDCYVQNSLVHMYATVGDIKAARSIFQRVHRFDIVSWTCMIAGYHRCGDVVAARELFDRMPEKNLVTWSTMFSGYARNNCFDKAVELFEVLQAEGVVANETVMVGVISSCAHLGALDMGEKAHEYVMRHNLTLNLILGTAIVDMYARCGNVQKAVQVFEQLPEKDVLCWTALIAGLAAHGYAETALEYLSEMVRTGLVPRDITFTAVLTACSHGGLVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLTEAENFVLKMPVKPNAPIWGALLGACRIHRNVEVGERVGKILIQMEPEHSGYYVLLSNIYARTNKWKDVTIMRRMMKEKGVRKPPGYSLIEVDGKIHEFTIGDKTHPEIEKIERVWEDILQQIKLAGYVENTAETLFDIDEEEKEDALHRHSEKLAIAYGIMNIRPPTPIRIVKNLRVCEDCHTATKLISKVFKVELIVRDRNRFHHFKEGTCSCMDYW* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0410 620 Pfam DYW family of nucleic acid deaminases 528 620 IPR032867 GO:0008270
Apr4g0410 620 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 83 594 - -
Apr4g0410 620 Gene3D Tetratricopeptide repeat domain 180 282 IPR011990 GO:0005515
Apr4g0410 620 Pfam E motif 430 492 IPR046848 -
Apr4g0410 620 Gene3D Tetratricopeptide repeat domain 287 496 IPR011990 GO:0005515
Apr4g0410 620 Gene3D Tetratricopeptide repeat domain 21 179 IPR011990 GO:0005515
Apr4g0410 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Apr4g0410 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Apr4g0410 620 Pfam E+ motif 497 524 IPR046849 -
Apr4g0410 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 211 IPR002885 -
Apr4g0410 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Apr4g0410 620 TIGRFAM PPR: pentatricopeptide repeat domain 183 213 IPR002885 -
Apr4g0410 620 TIGRFAM PPR: pentatricopeptide repeat domain 316 347 IPR002885 -
Apr4g0410 620 TIGRFAM PPR: pentatricopeptide repeat domain 350 383 IPR002885 -
Apr4g0410 620 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Apr4g0410 620 Pfam PPR repeat 183 212 IPR002885 -
Apr4g0410 620 Pfam PPR repeat 214 244 IPR002885 -
Apr4g0410 620 Pfam PPR repeat 387 412 IPR002885 -
Apr4g0410 620 Pfam PPR repeat family 312 360 IPR002885 -
Apr4g0410 620 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 83 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0410 Apr-Chr4 3499324 3501223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0410 40 620 Glycoside Hydrolase AT3G49170 33.333 1.46e-125 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0410 - - gmx:100797063 1113.98