Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0408 ATGGAGAATGCAACTACATCTAGCTTAGCGAGAACGAAATCGGATCAACTGGTGGAGTCGATGGCGGCGGCTTTAAAGTCGCCGCCATCTAGTGAATCAATAGGAGTGGCGGAGGGTGGTGGAACCCTATCAAGGAAATCAAGCCGGAGGATGATGGCGGCGTCACCGAGTCGCTGCGGTGGCAAAAACACGCACATAAGAAAGGCTAGGAGCGCTCAGTTGAAGCTTGAGCTGGATGAGGTGAGCAGCGGCGCGGCTCTTAGCCGAGCTTCCAGTGCCAGCTTGGGCCTCTCATTCTCCTTCACTGGCTTCACTGTGCCTCCTGATGAAATAGCTGACACCAAACCCTTCAGTGATGAAGATATCCCGGAGGATATTGAAGCCGGAACTCATAAGCCAAAGTTTCAAACGGAACCTACTCCACCGATATATCTGAAGTTCAAAGATGTGAACTACAAGGTAGTGATCAAAGGCATGACCACAACTGAGGAGAAGAATATCTTGAAGGGGATCACTGGTTCTGTAAATCCAGGAGAAGTTTTGGCATTGATGGGTCCCTCGGGAAGTGGAAAGACATCTTTGTTAAATCTGCTTGGAGGAAGGTTAAGCCAGCCCATGATTGGTGGCTCTATCACTTACAATGACCAACCTTATTCCAAGTTTCTAAAGAGCAGGATTGGATTTGTGACACAAGATGATGTTCTGTTTCCTCACCTTACTGTAAGAGAAACATTGACTTATGCAGCCCGCCTAAAGTTGCCACATACATTAACTAAAGAGCAAAAGGAAAAACGAGCTTTAGATGTCATCGAAGAGCTGGGATTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTTTGTTCGAGGAGTATCTGGTGGAGAGAGGAAGAGAGTTTGTATTGGCAATGAGATCATAATCAACCCTTCTCTTCTGCTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTGAGGATAGTTCAGATGCTACAAGACATAGCAGGGGCTGGTAAAACCGTGGTGACAACAATCCATCAACCATCAAGCAGACTCTTTCATAAATTTGATAAGTTGACCCTTCTAGGAAAAGGGAACTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGGACTACTTCCAGTTTATAGGGTGCACACCTCTTATTGCTATGAACCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACATAAATGATATTTCTGTCCCATCAGAGTTAAATGATGAAGTGCAGATGGAAAATGCTGAAGCTGAAACACGAAACGGGAAACCATCAGCTGCAGCTGTACAAGAGTATCTGGTGGAGGCATATGAGACTCAAGTTGCCAAAACGGAGAAGACAAAGTTAATGATTCCTATCCCCCTTGATGAAGAAGTGAAGTCTAAGGTTTGTTCTTGCAGAAGACAGTGGGGAGCAAGTTGGTTTGAGCAATTTTCCATATTATTTTCTAGAGGATTCAAAGAACGGAGGCATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTCTTTCAACTGCAGTCATCTTAGGACTACTATGGTGGCAATCAGATGCTAACAACCCAAAAGGTCTCCAAGATCAGGCAGGACTGCTTTTCTTTATTGCTGTGTTTTGGGGATTCTTTCCTGTCTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTAACTAAGGAACGAGCAACGGATATGTACAGGCTAAGTGCATACTTTGTGGCAAGAACTACAAGTGATCTTCCACTAGACCTGGTATTACCAGTGCTTTTCCTCCTCGTTGTTTATTTCATGGCCGGTTTGAGACTGAGTGCAGGCCCTTTTTTCCTCAGCATTCTTACAGTTTTTCTCTGCATCGTGGCAGCTCAGGGGCTTGGACTTGCTATTGGGGCTACACTGATGGACTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACTTTCATGCTGGCTGGTGGTTTTTTTGTCAAGGAAGTCCCCAAATTTATATCATGGATTCGCTACATATCTTTCAACTACCACACGTACAAACTTTTGCTAAAGGTACAATATGAAAAACACATAACACCTACCATAAATGGGATCAGAATTGACAGTGGATTCACAGAGGTTGCAGCTCTTATAGCCATGGTTTTTGGTTACCGTTTGTTGGCATATCTTTCTTTGCGGTGGATGAAACTTCAAGCTGGAACTTAA 2229 0.4419 MENATTSSLARTKSDQLVESMAAALKSPPSSESIGVAEGGGTLSRKSSRRMMAASPSRCGGKNTHIRKARSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTVPPDEIADTKPFSDEDIPEDIEAGTHKPKFQTEPTPPIYLKFKDVNYKVVIKGMTTTEEKNILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGGRLSQPMIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVRETLTYAARLKLPHTLTKEQKEKRALDVIEELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLLLDEPTSGLDSTTALRIVQMLQDIAGAGKTVVTTIHQPSSRLFHKFDKLTLLGKGNLLYFGKASEAMDYFQFIGCTPLIAMNPAEFLLDLANGNINDISVPSELNDEVQMENAEAETRNGKPSAAAVQEYLVEAYETQVAKTEKTKLMIPIPLDEEVKSKVCSCRRQWGASWFEQFSILFSRGFKERRHDYFSWLRITQVLSTAVILGLLWWQSDANNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERATDMYRLSAYFVARTTSDLPLDLVLPVLFLLVVYFMAGLRLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKEVPKFISWIRYISFNYHTYKLLLKVQYEKHITPTINGIRIDSGFTEVAALIAMVFGYRLLAYLSLRWMKLQAGT* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0408 742 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 736 - -
Apr4g0408 742 SMART AAA_5 177 368 IPR003593 -
Apr4g0408 742 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 736 - -
Apr4g0408 742 Pfam ABC transporter 168 319 IPR003439 GO:0005524
Apr4g0408 742 MobiDBLite consensus disorder prediction 1 15 - -
Apr4g0408 742 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 145 391 IPR003439 GO:0005524
Apr4g0408 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 385 IPR027417 -
Apr4g0408 742 ProSitePatterns ABC transporters family signature. 291 305 IPR017871 GO:0005524
Apr4g0408 742 MobiDBLite consensus disorder prediction 1 65 - -
Apr4g0408 742 Gene3D - 144 385 IPR027417 -
Apr4g0408 742 CDD ABCG_EPDR 142 373 - -
Apr4g0408 742 Pfam ABC-2 type transporter 486 695 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0408 Apr-Chr4 3469264 3477944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0408 131 377 Calmodulin-binding Proteins AT2G36910 26.923 1.83e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0408 K05681 - gmx:100796008 1227.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0408 4 3469264 3477944 Apr4g0408 4 3469264 3477944 ECH
Apr4g0408 4 3469264 3477944 Apr8g0713 8 6849522 6859356 PCT