Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0407 ATGGACGCGGGAGCGTGGAGTTCTTCCACCAAGATCAAATCCCGATCCCCCTTCCAAGATCATTTCCACCGCAGAAGAAGTTCTCAAGAAAACTTGGACAGGTTCATTCCGAATAGGTCAGCCATGGACTTCGATTACGCTCACTACATGCTCACTGAGGGTAACAGGAAGGGCAAAGAAAACCCTATGATGACGTCACCATCCCGAGCAGCCTACCAGAAGCAACTCGCTGAGGCCTTCAATATGAACCGCACTCGAATCTTGGCCTTCAAGAACATGCCTCCAACTCCCGTTGAACTCATTCCCAAGGCTATCCTTTCCTCTCCTCAATATAAAGCCTCTAAGCCCAAACGTTACATTCCGCAGAGTTCTGAGAGGACGTTGGATGCTCCTGATATACTAGATGACTTTTATTTGAATTTATTGGATTGGAGCAGCAGCAATGTTCTTAGTATTGCACTTGGGAATACTGTGTATCTATGGAATGCATCTGATAGTTCTACTGCAGAACTTGTTACTGTGGATGAAGAAGATGGTCCTGTGACAAGTGTTAGTTGGGCTCCTGATGGGCGTCATTTAGCCATTGGTTTGAACAATTCTCATGTCCAGCTGTGGGATTCTGATTCTGCTAGACTGCTAAGAACACTGAAAGATGGACACCAAGCACGGGTGGGTTCCATGGCTTGGAACAATCATATCCTCACAACTGGAGGAATGGAGGGTAGAATTGTCAACAATGATGTTAGAGTAAGATTTCATATTGTTGAAAGCTATAGGGGTCATCACCAGGAGGTGTGTGGGCTCAAGTGGTCTCCCTCGGGACAACAATTAGCGAGTGGGGGCAATGATAATGTTATTCACATATGGGACAGGTCTATGTCCAAGTCGAATTCGCTGACCCGGTGGCTTCATAAGTTTGAGGAGCACAGAGCTGCTGTAAAGGCACTGTCTTGGTGTCCATTCCAGGCAAATCTACTAGCTTCTGGTGGAGGCGAGGGTGATCAGTGCATTAAGTTCTGGAATACCCATACCGGTGCATGCTTAAACACTGTTAACACAGGCTCACAAGTGTGCGCTCTACTGTGGAACAAGAATGAGCGTGAGTTGCTTAGCTCGCATGGTTTCACACAGAATCAGCTCACTCTTTGGAAATACCCTTCAATGGTGAAGATGGCAGAGCTCAAGGGTCATACCTCCAGGGTGCTGTTCATGGCTCAGAGTCCAGATGGGTGTACTGTGGCCTCCGCGGCAGGGGACGAGACCCTGCGATTTTGGAATGTCTTTGGAACCCCAGAAGCTACCAAACCAGCGCCCAAGTATAAAATTGAGCCCTTTGCTCATGTGAACCGTATTCGTTGA 1359 0.4768 MDAGAWSSSTKIKSRSPFQDHFHRRRSSQENLDRFIPNRSAMDFDYAHYMLTEGNRKGKENPMMTSPSRAAYQKQLAEAFNMNRTRILAFKNMPPTPVELIPKAILSSPQYKASKPKRYIPQSSERTLDAPDILDDFYLNLLDWSSSNVLSIALGNTVYLWNASDSSTAELVTVDEEDGPVTSVSWAPDGRHLAIGLNNSHVQLWDSDSARLLRTLKDGHQARVGSMAWNNHILTTGGMEGRIVNNDVRVRFHIVESYRGHHQEVCGLKWSPSGQQLASGGNDNVIHIWDRSMSKSNSLTRWLHKFEEHRAAVKALSWCPFQANLLASGGGEGDQCIKFWNTHTGACLNTVNTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELKGHTSRVLFMAQSPDGCTVASAAGDETLRFWNVFGTPEATKPAPKYKIEPFAHVNRIR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0407 452 SUPERFAMILY WD40 repeat-like 124 427 IPR036322 GO:0005515
Apr4g0407 452 ProSitePatterns Trp-Asp (WD) repeats signature. 413 427 IPR019775 -
Apr4g0407 452 CDD WD40 142 426 - -
Apr4g0407 452 SMART WD40_4 299 341 IPR001680 GO:0005515
Apr4g0407 452 SMART WD40_4 387 426 IPR001680 GO:0005515
Apr4g0407 452 SMART WD40_4 167 206 IPR001680 GO:0005515
Apr4g0407 452 SMART WD40_4 344 384 IPR001680 GO:0005515
Apr4g0407 452 SMART WD40_4 251 290 IPR001680 GO:0005515
Apr4g0407 452 SMART WD40_4 209 247 IPR001680 GO:0005515
Apr4g0407 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 290 - -
Apr4g0407 452 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 450 IPR033010 GO:0010997|GO:0097027|GO:1904668
Apr4g0407 452 Pfam Anaphase-promoting complex subunit 4 WD40 domain 172 231 IPR024977 -
Apr4g0407 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Apr4g0407 452 Gene3D - 83 429 IPR015943 GO:0005515
Apr4g0407 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Apr4g0407 452 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Apr4g0407 452 Pfam WD domain, G-beta repeat 303 341 IPR001680 GO:0005515
Apr4g0407 452 Pfam WD domain, G-beta repeat 391 426 IPR001680 GO:0005515
Apr4g0407 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 290 IPR001680 GO:0005515
Apr4g0407 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 427 IPR001680 GO:0005515
Apr4g0407 452 MobiDBLite consensus disorder prediction 1 31 - -
Apr4g0407 452 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 450 - -
Apr4g0407 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0407 Apr-Chr4 3465868 3467915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0407 230 427 Miscellaneous Gene Families AT5G08390 22.613 5.18e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0407 K03363 - gmx:100801495 799.275