Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0403 ATGAGCACCATGGATTCCTCTTCCATCTATGGTGTCTCTAACTCCCTCTTCTTCTTCCTCACCCTCCTTCTCTTCTCCCTTCTACCAATCCATTCACATTCTGCATTCCCCCACAACACCTCTTCCTCTTCCACTTCCTCTCAGATCAATTCCAACTCAATCCTCGTCGCGCTTCTCGATTCCCATTACACCGAACTCGCCGAGCTCGTCGAGAAAGCCCTTCTTCTTCAGAAACTCGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCAGAAACCAAGCCCTCGAACGCGACCTTGACCCCGAATTCAAACGCTTCCTCCTCGAACCTCGCAATCTCAGGTCACTCCAGACACTCTTGATGTCCCACATTCTCCCCACGCGAATCGCCTCTCGCCACTGGCCCGCCGCCGACCTCCGCCACCCCACCCTCTCCGACCACCACCTCCATTTGACCTCCAAGCCCTCCGGCGAAAAAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCGTCCGCCCCGACGGCGTCATCCACGGCATCGAGCGCCTCATCGTCCCCCGATCCGTGCAGGAAGATTTCAACCGCCGCAGAAACCTCGCCGCTATCTCCGCCGTCCTACCCGAGGGGGCGCCAGAGGTCGATCCCCGAACCCACCGCCTGAAGAAACCCGCACCAGTCCCCGCTGGCGCCCCGCCGGTGCTTCCAATCTACGACGCAATGGCACCGGGACCATCGATTGCTCCGGCGCCGGCACCAGGACCGGGAGGACCGCGTCACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACTCTGTTGCATTACGGAGGATACAACGAAATGGCCGATATCTTAGTAAACTTAACATCGTTAGCGACCGAAATGGGAAGGTTAGTTTCGGAAGGTTATGTTCTCACCGTTTTGGCTCCAAACGACGAAGCGATGGCGAAGCTTACGACGGACCAGTTGAGCGAACCTGGTGCACCTGAACAGATCATGTACTACCACATCATTCCCGAGTACCAAACCGAGGAGAGTATGTACAATGCCGTTCGCAGGTTCGGTAAAGTCCGTTACGATACCTTGCGCTTGCCGCATAAGGTTCTCGCTCAGGAATCCGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCTGCCTACCTCTTCGATCCCGATATTTACACCGACGGCAGGATTTCCGTTCAGGGAGTTGACGGCGTTCTCTTCCCTCCGGAGGAGCAAGAAGACGCCACTCCCCGCTCTCGCAGGACCACTCCACTCGTTAAAGTCGCCGCTAAGCCAAGGAGAGGGAAGTTGATGGAGCTGGCCTGTAGCATGCTCGGAGTCTGCCAATGA 1377 0.5737 MSTMDSSSIYGVSNSLFFFLTLLLFSLLPIHSHSAFPHNTSSSSTSSQINSNSILVALLDSHYTELAELVEKALLLQKLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASRHWPAADLRHPTLSDHHLHLTSKPSGEKTVDSAEILRADDVVRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSIAPAPAPGPGGPRHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGVDGVLFPPEEQEDATPRSRRTTPLVKVAAKPRRGKLMELACSMLGVCQ* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0403 458 Gene3D FAS1 domain 291 418 IPR036378 -
Apr4g0403 458 SMART fasc_3 89 192 IPR000782 -
Apr4g0403 458 SMART fasc_3 313 418 IPR000782 -
Apr4g0403 458 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 4 456 IPR044654 -
Apr4g0403 458 SUPERFAMILY FAS1 domain 251 419 IPR036378 -
Apr4g0403 458 Gene3D FAS1 domain 54 191 IPR036378 -
Apr4g0403 458 SUPERFAMILY FAS1 domain 51 192 IPR036378 -
Apr4g0403 458 Pfam Fasciclin domain 307 416 IPR000782 -
Apr4g0403 458 Pfam Fasciclin domain 62 191 IPR000782 -
Apr4g0403 458 ProSiteProfiles FAS1/BIgH3 domain profile. 272 415 IPR000782 -
Apr4g0403 458 ProSiteProfiles FAS1/BIgH3 domain profile. 50 189 IPR000782 -
Apr4g0403 458 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 4 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0403 Apr-Chr4 3440486 3443198 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0403 - - gmx:100818575 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0403 4 3440486 3443198 Apr4g0403 4 3440486 3443198 ECH