Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0396 ATGACCCGTTTATCCGAGAAGCTCCGTTTATCTTCCTTGCTTCAGGAACCGACCCGTTTTCTCTCTCTTCTTTCTCTGTCCACTCTCAATCTCTGCAAGTCCCTCGCGCGCTTCATACTCTCCCAAACCCTACCCTTCCTCGCCATGGACAACCTCTTCTCCGATTACTTCTCCGACGACTTTGACTCCCCCTACCACCTCCGTCCCCACCGTCGATTCCTTCAAGAGGATGAACTTTATTTCGGCGACGAACGGGTCTACTTGCTTCCCTACAGGTGGTGGAGAGAAGCGGAAGTCGAAGTTGATCGTGTAGAGGGTGTTTTGTACACGGTGTCGTGCAATTCAGACTCTGACTTTGAAATTTTACTCCATCTGAGGAAGGAAGAGGACCGCCAGAAGATTAAAAATTTGGAAGTGGGGTTTTCTGGCCGTCAGTATGCCTTGGTTCCTGAAGGGATTTGGTTGCGTGCTCTCAAAAGGTATAACGATTTTAATAATGCAGTGAAAGATTTTGGAAGCTTCTCCTATGCGGAGGACAGTTTGCCAGATTTGTTCCCCTTGCAAGTTAGGATATTTGTTTCATGGGAAACCAGTTCACTTGTAGCAAAGATAAACCACAAGGAAAATATGGCTGACTTCTTTAAGAAAGCTTGTGATATTTTCGATTCTGCATATAACGCAGTGCATATTTGGGACTTTTCAGGGCAGACAACCCAATTCTTCTTGAATGACAAAGCTAGGTTGCCAAATGATTCTCCTGGTCAACCTGGAAAAGAGGTTTGTCTGGAATTACAAGTTCATGGACTTCCAGATTCTATGAGGGGTAACGAGAGCAATGAGATGATTTTAGATAGGTCTCAAGGGGAATGTTCTCGCAGTGGGTCTGTTATGATGAATGGAAGCACTGACAATGTGATTCCCTATGTAATAACAACCAACTATTTTCGAGGCAGTAGCTATAAAGCAGTTCGATCTTTGGGCCTGACAGGATTACAGAATCTTGGAAATACGTGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACATCGAAGCTTGTTGATTTTTTCCTTGGAGATTACCGTAAAGAGATAAATTATGAAAATCCATTAGGAATGAATGGAGAGCTTGCTCTAGCTTTTGGAGACTTACTTAGAAAACTGTGGGTTCCTGGAGCAAGGCCCGTTGCACCAAGAATGTTCAAGATGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTACAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTAGATGGACTGCATGAAGACCTTAATAGTGTGAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGTCGTCCTGATGAAGAAGTTGCGGACGAGTATTGGCGAAATCACCTTGCTCGAAATGACTCGATAGTAGTTGATCTGTGCCAAGGTCAGTTTCGGTCAACATTGGTTTGCCCTATTTGCAAGAAGATTTCTATCACGTTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACTACGATCCGGTCCATGACTTTGACTGTCATAAGTACTGACGGTATTGCATTACCTTCTACAATTACCGTTACAGTACCTAAATGTGGGACAGTTAAGGACCTAATTGGAGCCTTAAGTGCTTCTTGTTCACTGCAAGATGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAAAATTTTCCGAGTATGCAAGGATCCATCTGATTTGTTAGATGATATTAGAGGTCTAGACAAACTTGTCGCTTACCGAATGCCGAAGTATAATGAAACTAGTCCCTTGGTTGTTTTTGTGCATGAATGTTTGGTGGAAAGTTCTGGGAAGGAGAGGTTTGAAAACAGATTGTTTGGCATTCCACTTGTAACAAGGTTGTCCAGTCTTTCTTGTGGATATGATGTTCAAAGGGAGTTTCTGAAGTTAATCAGTCCATTTCAGATGTGTACTGAAGATATATTAGATGAGTCTGATAAGGATGACAGTGTTAATAAAAGGCTGAGTGAAGATGATGAATTGGGTGATACTACTAACTCTGCAGCAATAGGAAGTGATGTAGACTCAAATAGTGGAACAGAGGATGACATACATTTTTCGACTGATTTTGAATTCTACTTACCTTCTGGGTTAGGAATACAGAATGTCAAGATAACATTGAACAAGCCATTACCACCAATCACGATGTTGTCCAAAAGGCTGGAGATAGTTGTCTTATGGTCGGGTAAGATGCTTAAAAAGTATGATACATACCTACTTGACTCATTGCCTGAGGTTTTCAAGCCCCAGCTATGCACGAAGAGAATTGAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTAAAAGAGGAACCTCTTGGGCCAGATGACATGTGGTACTGTCCTACCTGCAAAAAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCATACTCCCAATTCAACAAGAACAAGCTGGAAACATTCGTTGATTTCCCAATCAATGATCTGAACTTAACAACCTTTGTAGCCCACAGCAATAGTCAGTCTTGCAACCGCTATATGTTGTATGCAATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCATTATACAGCATTTGTCCGTTATGGCCATGATAAATGGTATGATTTTGATGACAGCAGGGTTGAATATGTTAGTGAGGACATGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2784 0.4167 MTRLSEKLRLSSLLQEPTRFLSLLSLSTLNLCKSLARFILSQTLPFLAMDNLFSDYFSDDFDSPYHLRPHRRFLQEDELYFGDERVYLLPYRWWREAEVEVDRVEGVLYTVSCNSDSDFEILLHLRKEEDRQKIKNLEVGFSGRQYALVPEGIWLRALKRYNDFNNAVKDFGSFSYAEDSLPDLFPLQVRIFVSWETSSLVAKINHKENMADFFKKACDIFDSAYNAVHIWDFSGQTTQFFLNDKARLPNDSPGQPGKEVCLELQVHGLPDSMRGNESNEMILDRSQGECSRSGSVMMNGSTDNVIPYVITTNYFRGSSYKAVRSLGLTGLQNLGNTCFMNSAIQCLAHTSKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRKLWVPGARPVAPRMFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNSVKRKPYHEVKDADGRPDEEVADEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKISITFDPFMYLSLPLPSTTIRSMTLTVISTDGIALPSTITVTVPKCGTVKDLIGALSASCSLQDDETLLVAEIYKNKIFRVCKDPSDLLDDIRGLDKLVAYRMPKYNETSPLVVFVHECLVESSGKERFENRLFGIPLVTRLSSLSCGYDVQREFLKLISPFQMCTEDILDESDKDDSVNKRLSEDDELGDTTNSAAIGSDVDSNSGTEDDIHFSTDFEFYLPSGLGIQNVKITLNKPLPPITMLSKRLEIVVLWSGKMLKKYDTYLLDSLPEVFKPQLCTKRIEESVSIYKCLEAFLKEEPLGPDDMWYCPTCKKPQQATKKLDLWRLPEILVVHLKRFSYSQFNKNKLETFVDFPINDLNLTTFVAHSNSQSCNRYMLYAISCHYGGLGGGHYTAFVRYGHDKWYDFDDSRVEYVSEDMIKTPAAYVLFYRKV* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0396 927 CDD Peptidase_C19R 755 925 - -
Apr4g0396 927 Gene3D Cysteine proteinases 597 927 - -
Apr4g0396 927 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 870 887 IPR018200 GO:0004843|GO:0006511
Apr4g0396 927 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 330 345 IPR018200 GO:0004843|GO:0006511
Apr4g0396 927 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 927 - -
Apr4g0396 927 SUPERFAMILY Cysteine proteinases 327 926 IPR038765 -
Apr4g0396 927 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 927 - -
Apr4g0396 927 Pfam Ubiquitin carboxyl-terminal hydrolase 329 924 IPR001394 GO:0004843|GO:0016579
Apr4g0396 927 MobiDBLite consensus disorder prediction 682 697 - -
Apr4g0396 927 MobiDBLite consensus disorder prediction 668 699 - -
Apr4g0396 927 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 329 927 IPR028889 -
Apr4g0396 927 Gene3D Cysteine proteinases 316 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0396 Apr-Chr4 3388389 3397008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0396 781 927 Miscellaneous Gene Families AT4G31670 32.000 1.00e-15 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0396 - K21343 gmx:100791802 1466.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0396 4 3388389 3397008 Apr4g0396 4 3388389 3397008 ECH